Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo190g00022 ATGGCTAGAAAGAAGGTCAACCATACATACATAAGCAATCCAGCCAAGAGGAAGGCAGCGTTAAAGAAAAGGAAAAATGGTTTGGTCAAGAAGATTTCTGAAATCACCACCCTTTGTGGGATTAAAGCATGTGCTATCATTTATAGTCCAGAGGAACCTGAGCCTGAGGTTTGGCCATCTGACCGAGCAGTCCAAAGTGTGATTTCCAGGTTTAAGGGAGTGTCAGAACTGGAACAAAGCAAGAAAATGTTGTGCCAAGAGAGCCTTTTGAGGAAGAATTTAATCAAAGCCCAGCGGCAGCTGATGAAACTGAGGAATGAAAACAGGAAGAAGGAGATGTCCCTTCTCATGTGTCAATACTTCACTGGTGGGTACAACCTTGAGAATGCCAACATCATTGATCTGAATGATATCACATTCATGACTGATAAAAAATTGGAGGAAATTAGAAAGCAAATCGAAATGCGCCTAGGCCCAAGAAGTGACACCAGAAATTGA 498 0.4217 MARKKVNHTYISNPAKRKAALKKRKNGLVKKISEITTLCGIKACAIIYSPEEPEPEVWPSDRAVQSVISRFKGVSELEQSKKMLCQESLLRKNLIKAQRQLMKLRNENRKKEMSLLMCQYFTGGYNLENANIIDLNDITFMTDKKLEEIRKQIEMRLGPRSDTRN 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo190g00022 165 FunFam Agamous-like MADS-box protein AGL80 13 98 - -
Pumo190g00022 165 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Pumo190g00022 165 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Pumo190g00022 165 SUPERFAMILY SRF-like 3 93 IPR036879 GO:0003677|GO:0046983
Pumo190g00022 165 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo190g00022 165 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo190g00022 165 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo190g00022 165 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo190g00022 165 Coils Coil 87 114 - -
Pumo190g00022 165 PANTHER MADS BOX PROTEIN 3 154 - -
Pumo190g00022 165 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo190g00022 1 155 Type I MADS-box Gene Family AT5G48670 47.097 3.42e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo190g00022 SRF-TF 7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo190g00022 - - gmx:100781335 216.083