Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo190g00021 ATGGCTAGAAAGAAGGTCGACCATACATACATAAGCAATCCCGCGAAGAGGAAGGCAACGTTCAAGAAAAGGAAAAATGGTTTGCTCAAAAAGGTTTATGAAATCACTGTCCTTTGTGGGATTGAAGCATTTGCTATCATTTACAGTCCAGATGAACCTGAGCCTGAGGTTTGGCCATCCGACGAGGGAGTCGAAAGTGTGATTTCCAGGTTTAAAGGAGTATCTGAACTGGAACAAAGCAAGAAAATGTTGTGTCAAGAGAGCTTCTTGAGGCAGAAAGTCAACAAATCCCTGGAGCAGCTGAAGAAACTGAGGAATGAAAACAGGAAGAAGGAGATTGACCTTTTCATGTGTCAATACTTTGCTGTTGGGAACAACGACCTTGACAATGCCAACATGATTGATCTGAATGATATCACATTCTTGATTGATCAAAAGTTGGAGGAGATTAAAAAGAAGATCGAAATGCTCCAAGCCCAAGAGGTGACACCAGCTATTGAAAATGGAGGAGAAACCATGACTCAAGGAGAAAATGTCCAAGGGCCTGAGACCAATGTGGATGCCATGCCAAATCTGAATTGGTCTATGGACAATGCTGGTAGTGGGGATGGGATGTTAGCATTGGAAGATGTTAATGTTCAAAGTGGTTGGCTTAACCAATACATCCTTTGA 672 0.4226 MARKKVDHTYISNPAKRKATFKKRKNGLLKKVYEITVLCGIEAFAIIYSPDEPEPEVWPSDEGVESVISRFKGVSELEQSKKMLCQESFLRQKVNKSLEQLKKLRNENRKKEIDLFMCQYFAVGNNDLDNANMIDLNDITFLIDQKLEEIKKKIEMLQAQEVTPAIENGGETMTQGENVQGPETNVDAMPNLNWSMDNAGSGDGMLALEDVNVQSGWLNQYIL 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo190g00021 223 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pumo190g00021 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo190g00021 223 FunFam Agamous-like MADS-box protein AGL80 13 98 - -
Pumo190g00021 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Pumo190g00021 223 Gene3D - 14 98 IPR036879 GO:0003677|GO:0046983
Pumo190g00021 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo190g00021 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo190g00021 223 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Pumo190g00021 223 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Pumo190g00021 223 Coils Coil 87 114 - -
Pumo190g00021 223 PANTHER MADS BOX PROTEIN 3 157 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo190g00021 1 192 Type I MADS-box Gene Family AT5G48670 44.330 6.93e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo190g00021 SRF-TF 2.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo190g00021 - - gmx:100783663 302.753