Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo190g00018 ATGCATGTGCAAGGGCCTTGCCATAAGCTTAGAATGGCACACCAGGAACTTTCCATTGCTCTAGTGACTCTCATTGTTCTCTTTATCAACATGAACCTGCAAGGTGCCACTGCTGACTATGGCGGTTGGCAGAGTGCTCATGCCACTTTCTATGGTGGGGGTGATGCTTCTGGCACAATGGGTGGAGCATGTGGGTATGGAAATTTGTATAGCCAGGGCTATGGAACTGACACTGTGGCTCTAAGCACTGCTTTGTTCAACAATGGCTTAAGCTGTGGATCTTGCTATGAGATGAGATGTGATGATGACCCAAGATGGTGCAAACCTGGCTCTATTACTGTCACTGCTACTAACTTCTGCCCCCCAAACCCATCTTTGCCTAACAACAATGGTGGTTGGTGCAACCCTCCTTTGCAACACTTTGATATGGCTGAACCTGCCTTCCTGCAAATTGCTGAATATAGAGCTGGAATTGTGCCTGTGGCCTTCAGAAGGGTTCCTTGTGTGAAAAAGGGAGGAATAAGGTTCACCATCAATGGCCACTCATACTTCAACCTAGTTTTGATCACCAATGTAGCTGGTGCTGGGGATGTGCGTTCAGTGTCCATCAAAGGGTCCAAAACTGGGTGGCAACCCATGTCAAGGAACTGGGGGCAAAACTGGCAAAGCAACTCCTACCTCAATGGACAATCCCTCTCTTTTCAAGTCACCACCAGTGATGGCAAAACTGTGACTAGCTACAATGCGGCACCAGCCAATTGGCAGTTTGGCCAGACCTTCCAAGGAGGCCAATTCTAG 798 0.485 MHVQGPCHKLRMAHQELSIALVTLIVLFINMNLQGATADYGGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTDTVALSTALFNNGLSCGSCYEMRCDDDPRWCKPGSITVTATNFCPPNPSLPNNNGGWCNPPLQHFDMAEPAFLQIAEYRAGIVPVAFRRVPCVKKGGIRFTINGHSYFNLVLITNVAGAGDVRSVSIKGSKTGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGKTVTSYNAAPANWQFGQTFQGGQF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo190g00018 265 PRINTS Expansin signature 172 184 IPR002963 GO:0009664
Pumo190g00018 265 PRINTS Expansin signature 184 205 IPR002963 GO:0009664
Pumo190g00018 265 PRINTS Expansin signature 112 122 IPR002963 GO:0009664
Pumo190g00018 265 PRINTS Expansin signature 248 264 IPR002963 GO:0009664
Pumo190g00018 265 PRINTS Expansin signature 100 111 IPR002963 GO:0009664
Pumo190g00018 265 PRINTS Expansin signature 73 87 IPR002963 GO:0009664
Pumo190g00018 265 PRINTS Expansin signature 219 240 IPR002963 GO:0009664
Pumo190g00018 265 PRINTS Expansin signature 131 148 IPR002963 GO:0009664
Pumo190g00018 265 PRINTS Expansin signature 148 161 IPR002963 GO:0009664
Pumo190g00018 265 SUPERFAMILY Barwin-like endoglucanases 42 191 IPR036908 -
Pumo190g00018 265 Gene3D - 173 265 IPR036749 -
Pumo190g00018 265 CDD DPBB_EXPA_N 42 168 - -
Pumo190g00018 265 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Pumo190g00018 265 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576
Pumo190g00018 265 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576
Pumo190g00018 265 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Pumo190g00018 265 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Pumo190g00018 265 PRINTS Expansin/Lol pI family signature 156 172 IPR007118 GO:0005576
Pumo190g00018 265 Pfam Expansin C-terminal domain 174 251 IPR007117 -
Pumo190g00018 265 SUPERFAMILY PHL pollen allergen 170 262 IPR036749 -
Pumo190g00018 265 SMART dpbb_1 78 163 IPR007112 -
Pumo190g00018 265 FunFam Expansin 32 169 - -
Pumo190g00018 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 183 262 IPR007117 -
Pumo190g00018 265 Gene3D - 28 168 IPR036908 -
Pumo190g00018 265 PANTHER EXPANSIN-A15 23 265 IPR002963 GO:0009664
Pumo190g00018 265 Pfam Lytic transglycolase 78 162 IPR009009 -
Pumo190g00018 265 FunFam Expansin 173 265 - -
Pumo190g00018 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 173 IPR007112 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo190g00018 17 265 Expansin Gene Family AT2G40610 78.486 4.73e-147 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo190g00018 - K20628 gmx:100777044 485.723