LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo190g00017	ATGTATTCCAATAAAGGATGTAAGGAGGATGGCAAAGCTGAGCCTCGTTACATGGAAACCGACCCAACTGGTAGATATGCTCGGGTTGGAGATATTCTAGGAAAAGGGGCAATGAAGACAGTGTATAAAGCAATTGATGAGGTACTTGGAATAGAAGTAGCATGGAACCAGGTCAAACTCAACGAGGCACTTCGCAAACCAGAGGACTTGGAGCGGCTTTATTTAGAGGTTCATCTCCTCAGCACCCTCAAGCACCAATCCATCATGATATTCTACACCTCTTGGATTGATGTTGACAACAAGACCTTCAATTTCATTACAGAAATGTTTACTTCAGGGACACTGAGAGAGTACAGGAAGAAATATAAGCACATAGGTCTACAAGCCATAAAGAGTTGGGCTCGCCAAATATTACAGGGTCTTGTTTATCTACATGAACATGATCCTCCAGTAATTCATAGGGACCTCAAATGTGATAACATATTTGTCAATGGCCATCTTGGACAAGTGAAAATTGGTGACCTGGGTCTAGCAGCAATTCTCCATGGTTCCCAACCAGCTCACAGTGTTATAGGCACCCCAGAGTTCATGGCACCAGAATTATATGAGGAAGAATACAATGAACTTGTTGATGTGTACTCATTTGGCATGTGTGTTTTGGAAATGCTTACATCTGATTACCCATACAGTGAATGTACTAACCCTGCACAGATATACAAGAAAGTAACATCGGGGAAGCTACCAGCATCATTTTTCAGGATTGAAGACACAGAAGCACAAAAGTTTATTGGCAAATGTCTCATAACTGCGGCAAAGAGACCATCAGCAAAAGAATTGTTGAATGATCCATTTCTTTTGTCTGATGATGCATCATCCATTACAAAGGTTGGAATTCAGAAGCCATTTTTAAATTACAATGAAATGGAAAAGCTTCAGTTGAATGATGATTCACCTAGGACTGAAATGTCAATAACTGGGACGCTGAATCCAGAACATGATACTATCTTTCTCAAAGTGCAAATTTCTGACAAGGATGGTATCAACATTTACTTGACACTTTATGTGCTCTTTCATTCTAAATACATGTTTCTAGCAATTTTACCAGGACATCATTTACTTTTGTTTAGTAAATGA	1134	0.3951	MYSNKGCKEDGKAEPRYMETDPTGRYARVGDILGKGAMKTVYKAIDEVLGIEVAWNQVKLNEALRKPEDLERLYLEVHLLSTLKHQSIMIFYTSWIDVDNKTFNFITEMFTSGTLREYRKKYKHIGLQAIKSWARQILQGLVYLHEHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSQPAHSVIGTPEFMAPELYEEEYNELVDVYSFGMCVLEMLTSDYPYSECTNPAQIYKKVTSGKLPASFFRIEDTEAQKFIGKCLITAAKRPSAKELLNDPFLLSDDASSITKVGIQKPFLNYNEMEKLQLNDDSPRTEMSITGTLNPEHDTIFLKVQISDKDGINIYLTLYVLFHSKYMFLAILPGHHLLLFSK	377

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo190g00017	377	CDD	STKc_WNK	25	285	-	-
	Pumo190g00017	377	Pfam	Protein kinase domain	30	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo190g00017	377	Gene3D	Phosphorylase Kinase; domain 1	11	108	-	-
	Pumo190g00017	377	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	9	346	-	-
	Pumo190g00017	377	ProSiteProfiles	Protein kinase domain profile.	27	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo190g00017	377	Gene3D	Transferase(Phosphotransferase) domain 1	110	293	-	-
	Pumo190g00017	377	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	151	163	IPR008271	GO:0004672\|GO:0006468
	Pumo190g00017	377	SMART	serkin_6	27	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo190g00017	377	SUPERFAMILY	Protein kinase-like (PK-like)	28	330	IPR011009	-
	Pumo190g00017	377	FunFam	probable serine/threonine-protein kinase WNK9	110	290	-	-
	Pumo190g00017	377	FunFam	Probable serine/threonine-protein kinase WNK1	12	108	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo190g00017	17	356	MAP Kinase Kinase Kinase	AT5G58350	69.186	6.11e-176	500

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Pumo190g00017		Pkinase	8.6e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo190g00017	K08867		-	gmx:100778102	679.093