Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo190g00004 ATGGAGATATCATTGTTAAAAATGGTCGTAAATGGCATATCCTCATTTTTGCATTTATCAATTTCTGGAAACATGAACTCTGAACTTGTCTCAAAGTATTACCAGAAGGCAGAGGAGATACTTAAGTTGTTGAAGCCAATCATTGATGCAATTGTTAATTCTGAGTTAGCTTCTGATGAAGTGCTTAATAAGATATTGGAAGAAATTGGTCTTGCTGTTAATGAATTAAAGGAGCATGTTGAGAACTGGCACCTATTGTCTAGCAAAGTATACTTTGTTATGCAAGTTGAACCTCTGATATCAAGAATTCGCACTTCAGGGCTCCATATTTTCCAGCAGCTGAAGGCTTCTCAGCATTCTCTCCCTGATGAATTAAGTTCAGAACATTTACAGCACTGTTCACAAAAACTTAAGCTTTTGGGACATGAAGAAACCTCATCAGTCATTAAGGAAGCTATTAACGAACAACCGGAAAGTGTAGGACCCAGTTCAGAGGTCCTGACAAAAATTGCTGATAGCCTGAGCCTAAGGTCTAATCAGGAGGTTCTTATTGAGGCCGTGGCCCTCGAAAGGTTGAAGGAGAATGCTGAACAAACTGAAAAGACTGCAGAAGCTGGATACATTGATCAAATGATTGCTGTTGTAACACGTATGCACGATAGTCTTGTTATGCTTAAGCAAGCCCAGAGTAGCAGCCCAGTTCCAATACCTGCTGATTTTTGTTGTCCTCTTTCTTTGGAGTTGATGACTGATCCCGTGATTGTGGCATCAGGGCAAACATATGAGCGAGCTTTCATCAAGAACTGGATTGATCTCGGGCTTACTGTTTGTCCAAAGACACGTCAGACTCTGGCTCATACCAACCTAATACCTAATTATACTGTAAAAGCACTAATTGCAAATTGGTGTGAATCAAACAATGTGCAACTGGTTGATCCCACAAAATCCACTACGTTAAATCAAGCATCCGTCCTTCACGGGTATATGGAATCTGGTACAACCAGGGAATCACCTGTTTTTGCTCATTCCAGGAGCAACCAGCCATCCTCACCCGAGTCAGCACCTTCTCGTTCTTTTAGTTCACCAGGTAATAACTTAACTTCTGGTGGAATTCAGCGAGAGGGAACATCACCTTTGCATCCCCGTTCAACTTCAGAAGGCTCCTTAAGTGGTATAGTTAATGGGCAATATATGGATCTTGCAAGAGATGAAAGTTTGGATGACAGGTCTGCTAGCTCAGATGAAAGCAGTGTGGATTCAGCTAGCCAACCATCAATGTCACCATCTAGAAGGGAATCTTCCAGTGCCTTTAGCTCTGAACAATCTCAAACCCATATTAGAGCTGTTTCTGATTCCAGTGCACTTTCTACTGCAATTTTTCCTCAAGAAACACAAGGTGATGACAACAATGCTCCTAAGCTGTCAACGAGTGCAGGCCACAGTAGAGAAGCTTCTGGTGAATTAAATCCAGGGCCAGAAACTGCTGTTACTACTGCCGTGCCATCAGTGCATAGAGAACCTGAGTTCCCATCCCGATTGGAGACAAGGTCTCGAAGTCAACCCATTTGGAGGCGCCCATCAGAGAGGCATGTTCCTAGGATAGTATCTTCTCCTGTTCTTGAAACAAGAGCTGATCTTTCTGCTATTGAAACCCAGGTTCGGAATTTGGTTGAGGGCTTGAGGAGCTCTGATCTTGATACTCAGAGAGAGGCAACAGCAGAAATCCGCCTTCTTGCTAAGCACAATATGGATAATCGAATTGCAATTGCAAACTGTGGAGCCATTAACATATTAGTTGATTTACTTCGATCAACTGATACAACGATCCAAGAAAATGCTGTTACCGCACTTCTAAACTTATCAATCAATGATAACAACAAAACTGCAATTGCAAATGCTGGTGCTATTGAACCTCTGATTCATGTGCTTGAGACTGGGAGCCCAGAAGCCAAAGAGAATTCAGCTGCCACTCTTTTCAGCTTATCAGTGATTGAGGAAAACAAGATTTTCATAGGGAGGTCCGGGGCAATTGCACCACTGGTAGATTTATTGGGGAATGGAACCCCTAGGGGAAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGAATCGGATTGTGGAAGCTGGTGCTGTGAGGCACCTTGTGGAGTTAATGGACCCAGCAGCTGGAATGGTTGACAAGGCAGTGGCTGTCTTAGCAAATCTTGCCACAATTCCAGAAGGAAGAAATGCAATTGGTGATGAAGGTGGGATTCCTGTTCTGGTTGAGGTTGTTGAGTTGGGTTCTGCGAGAGGAAAGGAGAATGCAGCCGCAGCTCTTCTACATCTTTGCTTACATAGTCCCAGATTTTTAAGCAAGGTGCTTCAACAAGGAGCTGTCCCGCCATTAGTAGCTTTATCACAGTCAGGCACCCCAAGGGCCAAAGAAAAGGCCCAGGCTCTCCTTAATCAATTTAGAAGCCAAAGACATGGGACTACTGGGAGGGGCTGA 2511 0.4333 MEISLLKMVVNGISSFLHLSISGNMNSELVSKYYQKAEEILKLLKPIIDAIVNSELASDEVLNKILEEIGLAVNELKEHVENWHLLSSKVYFVMQVEPLISRIRTSGLHIFQQLKASQHSLPDELSSEHLQHCSQKLKLLGHEETSSVIKEAINEQPESVGPSSEVLTKIADSLSLRSNQEVLIEAVALERLKENAEQTEKTAEAGYIDQMIAVVTRMHDSLVMLKQAQSSSPVPIPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVQLVDPTKSTTLNQASVLHGYMESGTTRESPVFAHSRSNQPSSPESAPSRSFSSPGNNLTSGGIQREGTSPLHPRSTSEGSLSGIVNGQYMDLARDESLDDRSASSDESSVDSASQPSMSPSRRESSSAFSSEQSQTHIRAVSDSSALSTAIFPQETQGDDNNAPKLSTSAGHSREASGELNPGPETAVTTAVPSVHREPEFPSRLETRSRSQPIWRRPSERHVPRIVSSPVLETRADLSAIETQVRNLVEGLRSSDLDTQREATAEIRLLAKHNMDNRIAIANCGAINILVDLLRSTDTTIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLETGSPEAKENSAATLFSLSVIEENKIFIGRSGAIAPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVEAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRNAIGDEGGIPVLVEVVELGSARGKENAAAALLHLCLHSPRFLSKVLQQGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGTTGRG 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo190g00004 836 Pfam Armadillo/beta-catenin-like repeat 623 662 IPR000225 GO:0005515
Pumo190g00004 836 Pfam Armadillo/beta-catenin-like repeat 584 621 IPR000225 GO:0005515
Pumo190g00004 836 Pfam Armadillo/beta-catenin-like repeat 666 703 IPR000225 GO:0005515
Pumo190g00004 836 SUPERFAMILY RING/U-box 227 313 - -
Pumo190g00004 836 Gene3D - 536 831 IPR011989 -
Pumo190g00004 836 MobiDBLite consensus disorder prediction 415 483 - -
Pumo190g00004 836 FunFam RING-type E3 ubiquitin transferase 235 310 - -
Pumo190g00004 836 SUPERFAMILY ARM repeat 553 825 IPR016024 -
Pumo190g00004 836 Coils Coil 179 199 - -
Pumo190g00004 836 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 317 IPR013083 -
Pumo190g00004 836 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Pumo190g00004 836 MobiDBLite consensus disorder prediction 507 523 - -
Pumo190g00004 836 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Pumo190g00004 836 MobiDBLite consensus disorder prediction 338 392 - -
Pumo190g00004 836 MobiDBLite consensus disorder prediction 404 523 - -
Pumo190g00004 836 CDD RING-Ubox_PUB 237 289 IPR045210 -
Pumo190g00004 836 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 675 717 IPR000225 GO:0005515
Pumo190g00004 836 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Pumo190g00004 836 FunFam RING-type E3 ubiquitin transferase 536 831 - -
Pumo190g00004 836 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 593 635 IPR000225 GO:0005515
Pumo190g00004 836 SMART arm_5 582 622 IPR000225 GO:0005515
Pumo190g00004 836 SMART arm_5 664 704 IPR000225 GO:0005515
Pumo190g00004 836 SMART arm_5 745 785 IPR000225 GO:0005515
Pumo190g00004 836 SMART arm_5 623 663 IPR000225 GO:0005515
Pumo190g00004 836 SMART arm_5 705 744 IPR000225 GO:0005515
Pumo190g00004 836 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 716 757 IPR000225 GO:0005515
Pumo190g00004 836 PANTHER U BOX DOMAIN-CONTAINING 31 824 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo190g00004 196 836 U-box Gene Family AT2G23140 62.946 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo190g00004 - - gmx:100811250 1415.98