Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo183g00006 ATGGAAGGAATTACAAGTGACAAGGGGTTGTTGGAATGTGGAAGGAAGTGCACTCCACCACCGTTTTTGTTGAAGACTTACATGCTCGTGGAGGATCCGGCCACCGACGACGTCGTTTCGTGGAATGCCGAAGGGACGGCGTTTGTGGTGTGGCAGCCGGCGGAGTTTGCTCGTGATCTTCTCCCAACACTCTTCAAGCACAGCAACTTCTCCAGCTTTGTTCGCCAGCTCAATACTTATGGCTTTCGTAAAGTAGCAACAAGCAGATGGGAGTTTTTCAATGACAGGTTCAAGAAAGGTGGAAGAGAACTGCTCTATGAGATTCGGAGAAGAAAAGCATGGACCAGCAAGCAACAACAACCTAATAATAATGCACCAAACCAAGACTCTGATGAAGATCAAAGGTCCTCATCAACCTCATCATCTTCTTGCTACACTACTCTTGTGGATGAAAACAAGCGACTCAAGAAGGAGAATGGGGTGCTGAACTCTGAGCTCACAAGTATGAAAAGGAAGTGCAAGGAACTGCTTGACTTGGTTGCCAAATATTCATCACATGCAAAGGAGGAGAAAGAAGATGAAAGGCCAATGCTGTTTGGAGTGAGATTAGATGTTCAAGGAGGGAGGGAGATGAAGAGGAATAGAGCTGAGATAAGTGAAAGCGCAAGCATTATGTTGTCTCAGTCATGCAAATAG 696 0.4598 MEGITSDKGLLECGRKCTPPPFLLKTYMLVEDPATDDVVSWNAEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFFNDRFKKGGRELLYEIRRRKAWTSKQQQPNNNAPNQDSDEDQRSSSTSSSSCYTTLVDENKRLKKENGVLNSELTSMKRKCKELLDLVAKYSSHAKEEKEDERPMLFGVRLDVQGGREMKRNRAEISESASIMLSQSCK 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo183g00006 231 Gene3D - 14 112 IPR036388 -
Pumo183g00006 231 SMART hsfneu3 18 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo183g00006 231 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 183 IPR027725 -
Pumo183g00006 231 Pfam HSF-type DNA-binding 22 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo183g00006 231 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo183g00006 231 PRINTS Heat shock factor (HSF) domain signature 22 45 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo183g00006 231 PRINTS Heat shock factor (HSF) domain signature 60 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo183g00006 231 MobiDBLite consensus disorder prediction 115 145 - -
Pumo183g00006 231 FunFam Heat stress transcription factor B-4 14 112 - -
Pumo183g00006 231 SUPERFAMILY "Winged helix" DNA-binding domain 18 111 IPR036390 -
Pumo183g00006 231 Coils Coil 152 172 - -
Pumo183g00006 231 ProSitePatterns HSF-type DNA-binding domain signature. 61 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo183g00006 19 204 HSF AT2G41690 55.556 1.19e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo183g00006 HSF_DNA-bind 1.4e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo183g00006 K09419 - gmx:100802739 388.652