Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo179g00003 ATGGATACTAGAGCAGTTTTTGCGTATCCGTGCATCAGAGTTGAGGCTCTTCCATGCATCAGATATCTTACTTCTGACCCTCTCTCTTGCTATTCTCATCGTGTAGTCTGGGTGATCCCTCATGAGACAATTCACGCTTTGGCTGTGAACTTCTCTTTGCAACTCCATCACACGGCTGAGGAGAGTGTTGATGTGAGTAATCCAAGGGATGGACTTTTGAGATTAGTGAAATCACTTTCTCCCAAGGATAATATTGTCAATATTATTGCTTGCGAAGGGAAGGAAAGGGTAGTGAGAGATGAACTGTTAGGGAAGTGGAAGTCTATGTTGACAATGGCTAGCTTTTGTCAATATCCTTTGAGTTCTTATGTGAATTCTGTCATAAGCAGCCTGCTGAGGTGCTATTCAGAACATTATAATCTTGTGGAGAAGGGTGAGGCCATGTTGTTGGGATGCAAGGACAGAAATTTCATTTCAGCTTCAGCTTCAACTCAGCATTGA 501 0.4271 MDTRAVFAYPCIRVEALPCIRYLTSDPLSCYSHRVVWVIPHETIHALAVNFSLQLHHTAEESVDVSNPRDGLLRLVKSLSPKDNIVNIIACEGKERVVRDELLGKWKSMLTMASFCQYPLSSYVNSVISSLLRCYSEHYNLVEKGEAMLLGCKDRNFISASASTQH 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo179g00003 166 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 84 141 IPR005202 -
Pumo179g00003 166 Pfam GRAS domain family 84 162 IPR005202 -
Pumo179g00003 166 ProSiteProfiles GRAS family profile. 1 164 IPR005202 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo179g00003 45 162 GRAS Transcription Factor Family AT5G48150 39.535 9.55e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo179g00003 GRAS 5e-15 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo179g00003 - - gmx:100775665 140.584