Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo172g00022 ATGATAGTATTTATCTTTCTTGATGAAAGTCTGAACAAAATTCTTGAGCTAAAAGAATTGGAGCTGAGATGTCAAATACGGCTGAGTGGGATCGACGGACAGTTCAAGAGAGGCAGGAGAGGACCCGGTATTCCATCTCAAGAACATATTATTCGGATAGATATGAAGTTGGCAAATGAAGATGTCAGTATGCTTGCATTTACTTCAGAGCAGATTACTGCTCCATTCCTACTTCCCGAGATGGTTGAAAGAGTGGCTAGCATGCTCAATTACTTTCTGCTGCAATTGGTGGGTCCTCAAAGAAAATCGCTTAGTCTGAAGGATCCTGAGAAATATGAATTTCGTCCAAAGCATTTGCTAAAACAGGAGAGGTGGTATGCTATTCTTTTGCAATCTGTAGACTCAGTCAAACATGACTACAATAGGATTGAGTCTAAAAATGTTGTATTTACATCTTCATTAATCCTAGGAATTTGA 477 0.3899 MIVFIFLDESLNKILELKELELRCQIRLSGIDGQFKRGRRGPGIPSQEHIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQERWYAILLQSVDSVKHDYNRIESKNVVFTSSLILGI 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo172g00022 158 PANTHER UBIQUITINATION FACTOR E4 6 122 IPR045132 GO:0000151|GO:0030433|GO:0034450
Pumo172g00022 158 Pfam Ubiquitin elongating factor core 6 122 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo172g00022 6 122 U-box Gene Family AT5G15400 72.269 6.58e-46 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo172g00022 K10597 - gmx:100811444 155.221