Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo172g00021 ATGGCGGCGGCGGCGAAACCCCAACGCACTCCACAGGAAGTGGAAGACATCATCATCCGCAAAATCTTCCTCGTCTCCATAACCGAAATCGCCACCACCGCAACCACCGATTCGAGAATCGTGTATTTGGAACTAACCGCCGCGGAGATTCTCAGCGAGGGCAAAGAGCTCCGCCTCTCGCGCGATTGCATGGAGAGGGTTTTAATCGACCGTCTCTCCGGCGAATTCGCCGGCGCCGGTGACGAGTCTCCGTTTCAGTACCTCATCGGATGCTACCACCGCGCGCACGAGGAGGGGAAGAAAATCGCGAACATGAAGGACAAAGGGTTACGGTCGGAGATGGAGGCGGTGGTGAGGCAGGCCAAGAAGCTCTGCGTCAACTACTGCCGGATTCATCTCGCGAATCCCGAGCTCTTTTCGAGCCAGGGTTCGGCGAATTCTGGCGCCAATTCGCCGCTGCTGCCGCTGATTTTTGCGGAGGTTGGCGGTGGGAACGTGTTCGGTGGTGGCGGCGGTGGAGGGGCCAAGAGTCCGCCGGGGTTTCTGGAGGAGTTTTTCAGGGACCCTGATTTTGATAGCTTGGACCGGATTCTGAAGGGGCTGTATGAGGAGTTGAGAGGGAGTGTGATGAAGGTGTCTGCTCTTGGAAACTTTCAGGACTCATTGAGGGCTTTGTTGTATTTGGTTAGGTTTCCCATTGGTGCCAAGTCGCTTGTGAATCACGAGTGGTGGATTCCCAAAGGGGTTTATATGAATGGCCGTGCTATTGAGATGACCAGCATTTTGGGACCCTTTTTACATATCAGTGCTCTTCCTGATCAAGCCTTTTTCAAGGGCCAGCCTGATGTTGGGCAGCAGTGTTTTTCTGATGCATCAACTAGGCGACCAGCTGATTTGTTATCTTCATTTTCCACTATCAAAACTGTCATGAACAACTTGTATGATGGCCTAGCTGAAGTACTCCTCATCCTCCTTAAAAGTACAGATACTCGTGAAAATGTACTGGAGTATCTTGCGGAGGTGATCAATATAAATGCATCCAGGGCTCATATACAGGTTGACCCTATTACTTGTGCAAGTTCAGGCACGTTTGTAAATCTCAGTGCTGTCATGCTTCGTCTATGTGAGCCATTTTTAGATGCAAATCTAACAAAAAGAGATAAAATTGATGCAAAATATGTGCACTACTCAAACCGCTTGAAGCTAAGTGGGTTGACTGCTCTTCATGCATCATCAGAAGAAGTTACTGAATGGCTTAATAGTAAAAACCCAGCTAAGACTGGGGCAACCAATCAATATAATGATGATCAGAAACGCTTGCAACAATCCCAAGAGGCCAGTAGTTCTGGTAATAATGCTGGTGAGCACTCAAATGAAAATTCTGCACGTGCTGAAAAGACCAAATATTCATTTATTTGTGAATGCTTCTTTATGACCGCAAGAGTGCTCAACTTAGGCCTTTTAAAAGCATTTTCTGACTTCAAACACTTAGTTCAGGATATTTCTAGGTGTGAAGATGCTCTCGCCACACTTAAAGCCATGCAGGAGCGGACACCCACTCCTCAGGCAGAATTGGATATAAATCGACTTGAGAAAGAAATGGAGTTGTACTCACAGGAAAAACTATGTTATGAAGCTCAGATGTTGAGGGATAACACACTTATTCAAAATGCGCTTTCCTTCTACCGCTTGATGATTGTTTGGTTGGTTGGCTTGGTGGGTGGATTTAAGATGCCTCTAGCACCAACTTGCCCAATGGAATTTGCTACCATGCCTGAACATTTTGTGGAAGATGCCATGGAACTTCTAATATTTGCTTCCCGGATTCCAAAGGCCTTGGATGGAGTTGTACTGGATGAATTTATGAACTTTATAATTATGTTCATGGCCAGCCCTGAATTTATCAAAAACCCATACCTTAGAGCAAAGATGGTTGAAGTCTTGAACTGCTGGATGCCCCGTAGGAGGTAA 1971 0.4703 MAAAAKPQRTPQEVEDIIIRKIFLVSITEIATTATTDSRIVYLELTAAEILSEGKELRLSRDCMERVLIDRLSGEFAGAGDESPFQYLIGCYHRAHEEGKKIANMKDKGLRSEMEAVVRQAKKLCVNYCRIHLANPELFSSQGSANSGANSPLLPLIFAEVGGGNVFGGGGGGGAKSPPGFLEEFFRDPDFDSLDRILKGLYEELRGSVMKVSALGNFQDSLRALLYLVRFPIGAKSLVNHEWWIPKGVYMNGRAIEMTSILGPFLHISALPDQAFFKGQPDVGQQCFSDASTRRPADLLSSFSTIKTVMNNLYDGLAEVLLILLKSTDTRENVLEYLAEVININASRAHIQVDPITCASSGTFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVHYSNRLKLSGLTALHASSEEVTEWLNSKNPAKTGATNQYNDDQKRLQQSQEASSSGNNAGEHSNENSARAEKTKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDALATLKAMQERTPTPQAELDINRLEKEMELYSQEKLCYEAQMLRDNTLIQNALSFYRLMIVWLVGLVGGFKMPLAPTCPMEFATMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMASPEFIKNPYLRAKMVEVLNCWMPRRR 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo172g00021 656 MobiDBLite consensus disorder prediction 419 461 - -
Pumo172g00021 656 MobiDBLite consensus disorder prediction 419 458 - -
Pumo172g00021 656 Pfam Ubiquitin elongating factor core 262 653 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Pumo172g00021 656 PANTHER UBIQUITINATION FACTOR E4 5 655 IPR045132 GO:0000151|GO:0030433|GO:0034450
Pumo172g00021 656 Coils Coil 520 547 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo172g00021 3 654 U-box Gene Family AT5G15400 70.802 0.0 961
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo172g00021 K10597 - gmx:100806175 1207.59