Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo172g00017 ATGTCAGAACCATCCACCACCGCCGAATCATCCGCCGCCACCGCCCCTCCGCCGCCGGCGACCAAAAGCTGGGCCGACGAAGCAGACGAAGAAACCACCGCCTCCACCGCCGAGGCAGAAACCTCCTCCGTCAACCTCGACGCCTTAACCATCAGCGACATAAACCCTCCCAAACTCTTAGACGACCCCGACGATTCCAATATCCAAGCGGTTACCTCCGGCGATACGCCGTACACGTCGGCGGCGACGTTCGAGGACCTGAGCCTCTCGCCGGAGCTTCTGAAGGGGCTCTACACGGAGATGAAGTTCGAGAAGCCGAGCAAGATCCAGGCTATAAGCTTGCCGATGATCCTGAGCCCGCCACACCGGGATTTGATCGCTCAGGCGCACAATGGCTCCGGCAAGACCACGTGCTTCGTGCTCGGGATGCTCAGCCGCGTTGATCCGACGGTGCAGGCGCCACAGGCGCTCTGCATCTGCCCCACCCGGGAGCTGGCCATTCAGAACACTGAGGTGCTCCGCAGGATGGGGAAGTACACCGGGATTGCATCCGAGTGCCTTGTGCCGGTGGACCGGGATGCGGTTCATATATCGAAAAGGGCGCCTATTATGGCGCAGGTGGTGATTGGGACCCCGGGGACAATCAAGAAGTTCGTTAGCTTCAAGAAACTTGGGACCAAGAGGTTGAAGATTCTTGTTTTCGATGAGGCTGATCAAATGCTTGCTGAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGATATAGAAAAAGAGAATTCTAAGTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGAAACCGTCAAGAATTTTGTTTCAAGGACAGTCAGGATGGATCATAATAAACTCTTTGTAAAGAAAGAAGAACTATCTTTAGATGCAGTGAAGCAATATAAAGTGTATTGTCCTGATGAACTTGCTAAGATTGAAGTGATAAAAGATTACATATTTGAAATAGGAGAGAATGTGGGGCAAACCATTATATTTGTGCGCTCAAGAGATAGTGCAAAAGCATTGCATCAAGCACTTGTTAATTTGGGCTATGAGGTTACATCTATACAAGGTTCTCTTAGTATTGAAGAGAGAGACAAAGTTGTCAAGGAGTTCAAAGATGGTTTGACTCAAGTTCTTATATCAACAGATGTTCTTGCTCGTGGCTTTGATCAGCAACAGATTAATTTGGTCATCAATTATGATCTTCCAAAGAAATACGGTGTACCTGAGCCAGATTATGAAGTGTATTTACACAGGGTTGGCAGAGCTGGGCGTTTTGGGCGCAAGGGGGCTGTATTTAACCTGATATGTGATGAAAGGGATGAAAGGCTCATGTCGAAGATTGAGAACCATTTTGGCTCTCGTGTAACTGAGGTGCGAGCACAAAGTGTTGAAGACTATAAAGCTGCTCTCAAGGAAGCTGGTTTATTGCAATGA 1458 0.4856 MSEPSTTAESSAATAPPPPATKSWADEADEETTASTAEAETSSVNLDALTISDINPPKLLDDPDDSNIQAVTSGDTPYTSAATFEDLSLSPELLKGLYTEMKFEKPSKIQAISLPMILSPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPTVQAPQALCICPTRELAIQNTEVLRRMGKYTGIASECLVPVDRDAVHISKRAPIMAQVVIGTPGTIKKFVSFKKLGTKRLKILVFDEADQMLAEDGFKDDSLRIMKDIEKENSKCQVLLFSATFNETVKNFVSRTVRMDHNKLFVKKEELSLDAVKQYKVYCPDELAKIEVIKDYIFEIGENVGQTIIFVRSRDSAKALHQALVNLGYEVTSIQGSLSIEERDKVVKEFKDGLTQVLISTDVLARGFDQQQINLVINYDLPKKYGVPEPDYEVYLHRVGRAGRFGRKGAVFNLICDERDERLMSKIENHFGSRVTEVRAQSVEDYKAALKEAGLLQ 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo172g00017 485 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 82 111 IPR014014 GO:0003724
Pumo172g00017 485 MobiDBLite consensus disorder prediction 1 17 - -
Pumo172g00017 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 452 IPR027417 -
Pumo172g00017 485 Gene3D - 301 478 IPR027417 -
Pumo172g00017 485 Pfam DEAD/DEAH box helicase 108 279 IPR011545 GO:0003676|GO:0005524
Pumo172g00017 485 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 41 454 - -
Pumo172g00017 485 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 320 475 IPR001650 -
Pumo172g00017 485 SMART helicmild6 346 434 IPR001650 -
Pumo172g00017 485 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 116 291 IPR014001 -
Pumo172g00017 485 Gene3D - 61 298 IPR027417 -
Pumo172g00017 485 CDD SF2_C_DEAD 304 443 - -
Pumo172g00017 485 CDD DEADc_DDX19_DDX25 89 285 - -
Pumo172g00017 485 MobiDBLite consensus disorder prediction 1 45 - -
Pumo172g00017 485 SMART ultradead3 102 307 IPR014001 -
Pumo172g00017 485 Pfam Helicase conserved C-terminal domain 317 434 IPR001650 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo172g00017 83 466 Eukaryotic Initiation Factors Gene Family AT1G72730 36.573 4.92e-70 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo172g00017 K18655 - gmx:100778091 833.943