Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo167g00045 ATGGAAGGAAACACCGCCGCCTTCTTGGTCTCAGAATCCCTCCGCGGCGCGCGCCAGTTGCTCCCTCTCTCACTCTCTGTCTTCCCTTCCCTTCCCATAGCGCCCAAATTTCTTACACTCCCAAAACGACAAGGAGAACAAGGATTGCGATTCTCTCCAAAACGACACTCGCAAGATAATGGCAATGGTAGAATGGATCCAGAAAACCAGGAAAAGGAGCGTAAGTGCTCTGAAGTTGTTGATTCTGATTTTTTGGATCCCAAGGATCCTATACACCAGAAGGATATACAGGAGGTCCAGGAAACCATTGAGGGGGTTGGAGACAAGGATATGGATTTTACTTCCAACAAGATGGTCCTAGATGATATAGAACTTATGATGGGAATAGAGGACATGTCTACCCAAGCAAATGGTTTTGATAAGGAGCAGAAGCTAATGAATGAGTTTGAGCTGGTAATGAAAGGAACTGAAGATCTTATTTGTGATAGTGAATTGATCCCCTTGAACTTGGGATTAGATGAGAAACATAATGATGGAGGTGAAGTTGGGTTGACGGATTACCAAGTAGAAATGGAAGAAGGAGAAATTTCTGGAGACTTGGGAATAGATGGCAATTCATTTGATGTGGCTTCTGCAGATGCTTTAATTTTACAACAGATGGAAGTAGATGAGGTTCAGAAGCCTGAAAATGTAACTGGAAACATGATATATCCTTCTAAGATTGAGAACCAAGAAAAGGAAACAGGCTATGACTCTAATTCCTCTTTGGTAAATGCACTTCAAGACGCCAATAATAGTGTACAAGTGGAGCCTAGAACTAGTGGCAAGAAAGGTATTGCATGCGGAGTTGAAGTAGCAATTTCTCAAAAAACTATTGAATGTCAGAAGGAAGATAAAACAAAGTTGGATAACGCCAGTAAAAAGAGTACGCGTGGTGGGAACAAAGGAAAAAAGAAGAAAGCAGACAGAAAGAAGAGAGCAGAAAAGAACAAAGAACTTGGTGTTAAAAGATTGCAGTTACAGCATGTACAAAGACCAAAAGTTGTCTCACATTGTCGCCATTTTCTCAACGGAAGGTGCCATGAGGGTGACAAGTGTCAGTTTTCACATGATGCAGTGCCTCTAACAAAATCCAAGCCATGTACTCATTTTGCTCGTCACTCTTGCATGAAAGGGGATGATTGCCCATTTGATCACCAGCTCTCAAAATATCCTTGTACCAATTTTGTGTCCAAAGGCTCTTGTTATAGAGGTGATGCTTGCTTGTTTTCTCACCAGGTACCAACCAAAGAAGATATCCCCACGCCTTCAAATATGAGCAGACCAGAATTGTCTCCACTTCTGTCAGGAAATGCAAATTCCAGCACACCACTTAACAACAATCATGGCTCTAGTTCTGTCCAGCAAAACCGCTTTACTAATTCTGCAGGAATTCATTCTTGCACCAGTGTTGAACATAAGGTGACAAACACTGTACAGAAACAGCCTACACCACCTAAAGGAATTAGTTTCATCAATCTTGCAAAATTATCACCCAGCCTTAGTTCACTGAAACAAGGCACAGTAACAACCAAGGAAAGTCCTGTACAAATTGGGACCCGTCAAGATCAAAGTGCATTTGACAAAACACAAAACAAGGTGGAGATTCCTAAGAAATTGCCAGCTGTGACACCTAAGGGAATAAACTTTCTTTCTTTTGGCAAAGGCTCTGTCTGCAGTTTTAAAAGTGCTATTCCTTCCGATGTGAATTGGGAAAATGGTATCAAGTTGCCCCAGTTACTCAATTTTGGTTTGCCTCAGCAGGCAAATTCCTCTCTAAATAAGGGTGATTACAACAAAGCTAGTGACAGAACAAAACAAAATGTACCACAGACTGATATGTTCTTAAATGAGATTTTAGGGAAAAATCAATTTGTGGCAGAAGGAACTACATCAAAGTTTCCAGAGAAAACCTCAGTAGATTCCTCTCTAAATAAGGGTGATTACAACAAAGCTAGTGACAAAACAAAACAAAATGTACCACAGACTGATATGTTCTTAAATGAGATTTTAGGAAAAAATCAATCTGTGGCAGAAGGAACTATATCAAAGTTTCCAGAGAAAACCTCGGTAGATGTTTTTATGTGGGATCACAGCCATAGTAAATCAGTTCAAGAGGGGAAAATGTCATCTGATAATTGTCAGAGTTCAAAAGGCCAAAAGGCACTCTTATCAACTTTAGCATTTGCAGCTGAGCATGAATCTGACATTAAGATGAAATGCCCTACTGGTGGTTTGCCGGTATGA 2286 0.4068 MEGNTAAFLVSESLRGARQLLPLSLSVFPSLPIAPKFLTLPKRQGEQGLRFSPKRHSQDNGNGRMDPENQEKERKCSEVVDSDFLDPKDPIHQKDIQEVQETIEGVGDKDMDFTSNKMVLDDIELMMGIEDMSTQANGFDKEQKLMNEFELVMKGTEDLICDSELIPLNLGLDEKHNDGGEVGLTDYQVEMEEGEISGDLGIDGNSFDVASADALILQQMEVDEVQKPENVTGNMIYPSKIENQEKETGYDSNSSLVNALQDANNSVQVEPRTSGKKGIACGVEVAISQKTIECQKEDKTKLDNASKKSTRGGNKGKKKKADRKKRAEKNKELGVKRLQLQHVQRPKVVSHCRHFLNGRCHEGDKCQFSHDAVPLTKSKPCTHFARHSCMKGDDCPFDHQLSKYPCTNFVSKGSCYRGDACLFSHQVPTKEDIPTPSNMSRPELSPLLSGNANSSTPLNNNHGSSSVQQNRFTNSAGIHSCTSVEHKVTNTVQKQPTPPKGISFINLAKLSPSLSSLKQGTVTTKESPVQIGTRQDQSAFDKTQNKVEIPKKLPAVTPKGINFLSFGKGSVCSFKSAIPSDVNWENGIKLPQLLNFGLPQQANSSLNKGDYNKASDRTKQNVPQTDMFLNEILGKNQFVAEGTTSKFPEKTSVDSSLNKGDYNKASDKTKQNVPQTDMFLNEILGKNQSVAEGTISKFPEKTSVDVFMWDHSHSKSVQEGKMSSDNCQSSKGQKALLSTLAFAAEHESDIKMKCPTGGLPV 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo167g00045 761 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 189 760 IPR045124 GO:0003723|GO:0045892
Pumo167g00045 761 MobiDBLite consensus disorder prediction 311 325 - -
Pumo167g00045 761 SUPERFAMILY CCCH zinc finger 347 371 IPR036855 GO:0046872
Pumo167g00045 761 SUPERFAMILY CCCH zinc finger 404 430 IPR036855 GO:0046872
Pumo167g00045 761 Gene3D - 377 439 - -
Pumo167g00045 761 SMART c3hfinal6 375 401 IPR000571 GO:0046872
Pumo167g00045 761 SMART c3hfinal6 345 372 IPR000571 GO:0046872
Pumo167g00045 761 SMART c3hfinal6 403 427 IPR000571 GO:0046872
Pumo167g00045 761 MobiDBLite consensus disorder prediction 44 74 - -
Pumo167g00045 761 ProSiteProfiles Zinc finger C3H1-type profile. 375 402 IPR000571 GO:0046872
Pumo167g00045 761 Gene3D - 301 376 - -
Pumo167g00045 761 MobiDBLite consensus disorder prediction 428 469 - -
Pumo167g00045 761 ProSiteProfiles Zinc finger C3H1-type profile. 405 428 IPR000571 GO:0046872
Pumo167g00045 761 MobiDBLite consensus disorder prediction 430 469 - -
Pumo167g00045 761 Pfam CCCH-type zinc finger 351 371 IPR041367 -
Pumo167g00045 761 MobiDBLite consensus disorder prediction 296 310 - -
Pumo167g00045 761 ProSiteProfiles Zinc finger C3H1-type profile. 346 373 IPR000571 GO:0046872
Pumo167g00045 761 MobiDBLite consensus disorder prediction 48 74 - -
Pumo167g00045 761 MobiDBLite consensus disorder prediction 649 670 - -
Pumo167g00045 761 MobiDBLite consensus disorder prediction 296 333 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo167g00045 zf-CCCH_4 2.5e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo167g00045 - - gmx:100816509 1083.17