LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo167g00042	ATGGGTAGGGGCAGAACCGCCGCGGCGGTCGAGATCGCGGAGCCCGGTTCAAGGCCGGTTTTTTTCAAAGAACCGCGGTATAGGGGCGTCAGAAAAAGACCGTGGGGCCGGTTCGCCGCCGAAATCAGAGACCCTTTGAAGAAAGCCAGGGTTTGGCTCGGAACCTTCGACACCGCCGAGGAGGCGGCGCGTGCATACGACACGGCGGCGAGAACCCTCCGGGGACCAAAGGCAAAGACCAATTTCCCTCTTTCTCCGCCGTTTTACCACCCCGATCCGTTTTCCGATCACCGGTATTTCGCCGGCGCCGGCGAAGATTTCCACGATCACCGGCGACCCACCTCCAGCGGCATGAGCAGCACCGTCGAGTCCTTTAGCGGCCCACGCGCCGCCTTGCCGGTGCCGGCGGCCTCCTCCCGTAGGTACCCTAGGTCGCCGCCGGTCGTCCCCGAGGACTGCCGCAGCGACTGCGACTCGTCGTCCTCCGTCGTGGACGACGGCGATGGCGACAACGTGGCGTCGTCGTTCCGGCGAGAACCGTTGCCGTTTGATCTAAACGCGTTGCCGTTGGACGACGCTGACGTGGCAACTGATGATCTGTTCTGCACCGTTCTTTGCCTCTGA	624	0.6346	MGRGRTAAAVEIAEPGSRPVFFKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDTAEEAARAYDTAARTLRGPKAKTNFPLSPPFYHPDPFSDHRYFAGAGEDFHDHRRPTSSGMSSTVESFSGPRAALPVPAASSRRYPRSPPVVPEDCRSDCDSSSSVVDDGDGDNVASSFRREPLPFDLNALPLDDADVATDDLFCTVLCL	207

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo167g00042	207	PRINTS	Ethylene responsive element binding protein signature	49	65	IPR001471	GO:0003700\|GO:0006355
	Pumo167g00042	207	PRINTS	Ethylene responsive element binding protein signature	27	38	IPR001471	GO:0003700\|GO:0006355
	Pumo167g00042	207	CDD	AP2	25	85	IPR001471	GO:0003700\|GO:0006355
	Pumo167g00042	207	SMART	rav1_2	26	89	IPR001471	GO:0003700\|GO:0006355
	Pumo167g00042	207	Gene3D	AP2/ERF domain	26	85	IPR036955	GO:0003700\|GO:0006355
	Pumo167g00042	207	ProSiteProfiles	AP2/ERF domain profile.	26	83	IPR001471	GO:0003700\|GO:0006355
	Pumo167g00042	207	SUPERFAMILY	DNA-binding domain	26	85	IPR016177	GO:0003677
	Pumo167g00042	207	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	20	170	-	-
	Pumo167g00042	207	FunFam	Ethylene-responsive transcription factor 2	26	84	-	-
	Pumo167g00042	207	MobiDBLite	consensus disorder prediction	105	175	-	-
	Pumo167g00042	207	Pfam	AP2 domain	25	75	IPR001471	GO:0003700\|GO:0006355

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo167g00042	2	207	AP2-EREBP Transcription Factor Family	AT1G50640	59.031	5.42e-55	173

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Pumo167g00042		AP2	2.8e-15	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo167g00042	K09286		-	gmx:100782025	362.073