Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo167g00030 ATGAATAAGGCTTTGACATGTCAGATGTGTGAGGTCATTGTCAATGAGGTTGATGCTGTACTTCTATGTGATGCTTGTGAAAAGGGATTTCACTTAAAGTGCCTGCAGCCATCAGTCTTGAGAGGAATTCATAATAGAGTTGATTGGCACTGTATGAGGTGCTTGAGTTTAAGTGGTGGAAAGCCTTTGCCACCAAAATATGGTCGCGTAATGAGATCCTCAAGCACACCTCCAAAATTTCCCTCTAATACAGGTGGCATTCAACCATTTTCTGATCGAAGAAAGCAGAGAACACAGATCCAAAGGTCATCCCACAGACATTAA 324 0.4198 MNKALTCQMCEVIVNEVDAVLLCDACEKGFHLKCLQPSVLRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSSTPPKFPSNTGGIQPFSDRRKQRTQIQRSSHRH 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo167g00030 107 SMART PHD_3 6 55 IPR001965 -
Pumo167g00030 107 ProSitePatterns Zinc finger PHD-type signature. 7 54 IPR019786 -
Pumo167g00030 107 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 73 IPR013083 -
Pumo167g00030 107 MobiDBLite consensus disorder prediction 75 94 - -
Pumo167g00030 107 SUPERFAMILY FYVE/PHD zinc finger 3 63 IPR011011 -
Pumo167g00030 107 Pfam PHD-finger 7 55 IPR019787 -
Pumo167g00030 107 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 98 - -
Pumo167g00030 107 ProSiteProfiles Zinc finger PHD-type profile. 4 57 IPR019787 -
Pumo167g00030 107 MobiDBLite consensus disorder prediction 66 107 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo167g00030 17 95 C2H2 Transcription Factor Family AT3G01460 32.143 8.10e-07 44.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo167g00030 PHD 1.9e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo167g00030 - - gmx:100807139 187.193