Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo162g00002 ATGCCAACAGCAGCGACACAGCGTCAGATCTCTGTCTCGTTTGGTCCCTATGTACTTCGCCGCCATGTTCGGGTCGGGGAGCTTACGGAGGTGGCGTGCGATGGACCGGAAGGGCTTGAGGACGCATTGGGAACATCGCCAGGGACTCGGTGTTTGGACAGTGAGATGGGGAAGAAGGCGAAGAAAGCTATGAAGAAGAATTTGAAAAGGGCTTCCTTTAATAAGCCATCTGAGGGTGCTGATTTTTTGCCCTTGGAAGGTGGTCCTGCTCGTAAGCTTGCCCAGCAGAAGCCGCCGGAGAATACCGCCACGGTTTTGTATGTGGGTCGGATTCCACATGGATTCTATGAGAAGGAGATGGAAGGTTATTTTGGGCAATTTGGAACCATCAAGAGGTTGAGAATTGCAAGAAATAAAAAGTCTGGAAAATCAAGACATTTTGGGTTCATAGAATTTGAATCTCCCGAGGTAGCAAAAATTGTAGCTGATACTATGCACAATTATCTCCTTTTTGAACACCTTTTGCAAGTTTATTTGATACCTCCAGAGCATGTTCATCCAAGATTATGGAGAGGATTCAATTACCATTACAAGCCATTGGATTCAGTCCAAATTGAACGGAAGCGTCATGACAAGGAAAGAACATTGGAAGAGCACAAGAAATTGGTGGAGAAGATTCTGAAACATGACCAAAAACGACGTAAAAGGATAGAGGCTGCTGGCATTGATTATGAATGCCCTGAGATTGTGAGACTCTTGCTTTTATCAATCTGTACTTGCTCATTTGTTTTCATAAAATTAAAAAAGTCTGCATCTTGA 819 0.442 MPTAATQRQISVSFGPYVLRRHVRVGELTEVACDGPEGLEDALGTSPGTRCLDSEMGKKAKKAMKKNLKRASFNKPSEGADFLPLEGGPARKLAQQKPPENTATVLYVGRIPHGFYEKEMEGYFGQFGTIKRLRIARNKKSGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVYLIPPEHVHPRLWRGFNYHYKPLDSVQIERKRHDKERTLEEHKKLVEKILKHDQKRRKRIEAAGIDYECPEIVRLLLLSICTCSFVFIKLKKSAS 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo162g00002 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 173 IPR000504 GO:0003723
Pumo162g00002 272 CDD RRM_NIFK_like 105 177 - -
Pumo162g00002 272 SUPERFAMILY RNA-binding domain, RBD 87 192 IPR035979 GO:0003676
Pumo162g00002 272 SMART rrm1_1 105 178 IPR000504 GO:0003723
Pumo162g00002 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
Pumo162g00002 272 Gene3D - 57 179 IPR012677 -
Pumo162g00002 272 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 60 249 - -
Pumo162g00002 272 Coils Coil 205 225 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo162g00002 104 177 Eukaryotic Initiation Factors Gene Family AT1G71770 35.135 1.94e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo162g00002 K14838 - gmx:100778780 374.4