Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo161g00016 ATGCAAAACTCAAGCTCATCTTCTCCCCCCTCCCTTCTGCCGGTGGACACCGCGCCGTTCCTCCACCGGACCCGCCGCCTCCTCCGCCGCGCGCCGCCGCCCCTGCGCACGGCGGCGACCTTCTTCCGGCGCGCTAGCGGGCGGCGCATGATGCTGCGGGAGCCGTCGGTGCGCGTGCGGGAGGCGGCGGCGGCGGAGGTGGAGGGCCGGCAGAGCGAGTGGGCCTACTCGCGGCCGGTCGTGGTGCTTGACGTCGCGTGGAACGCCGCCTTCCTCGTGATCGGCGCGGCGGTGCTCGCCGCCAGCGCCAAAGAGGAGCCCTGCGTGCCTCTCAGAGCCTGGATTGTGGGGTACCTGCTGCAGGGCCTGCTGCACTCTCTCTGCGTCGTTGTTGAGTTCAGAAAAAGAAGAAGAAGAAGAATAAGTGGGACCCACCCGGGTTCTAACGTCGTGGACCACGTTGAATGGAGCTTCAGTTCCGAGAGTGACGAAGAGTTTTATCCTTCGGAACAGTTTCTCGAGGGTGAAGGAAACAGCGTCACAAAACACATAGAGTCTGCAAATACCATGCTTTCGTTCATATGGTGGATTGCTGGGTTCTACTGGGTAACCGCTGGTGGCCAGAGTTTGACAAGGGATTCACCTCAGCTTTACTGGCTCTGTATCACATTTCTTGCTTTCGATGTTGTGATTGTACTCATCTGTGTTGCTGTTGCATGTCTTATTGGTATTGCTGTTTGTTGTTGTCTGCCGTGCATACTTGCCATTCTGTATGTAGTGGCAGATCAGGAAGGGGCAACTAAGGAAGAGATTGACCAGTTGCCAAAATATAAGTTCAGAATAATAAAGGAATTTAAGAAAGAAGGAGATATTGAAGAATCTTCCAGAGGAATAATGACCGAATCTGACAGTGAGGCAGCCACTGAACATGTCATTGCCTTAGAAGATGCAGAATGCTGTATCTGCCTTTCTGCCTATGATGATGGTGCTGAACTCAGAGAACTTCCTTGCAACCACCATTTTCACTGCACATGCATAGACAAATGGCTGCAAATCAATGCTACCTGTCCTCTATGCAAGTTTAACATTTTGAGGACTGGCAACCACCATCAAGAAGTTTGA 1122 0.5357 MQNSSSSSPPSLLPVDTAPFLHRTRRLLRRAPPPLRTAATFFRRASGRRMMLREPSVRVREAAAAEVEGRQSEWAYSRPVVVLDVAWNAAFLVIGAAVLAASAKEEPCVPLRAWIVGYLLQGLLHSLCVVVEFRKRRRRRISGTHPGSNVVDHVEWSFSSESDEEFYPSEQFLEGEGNSVTKHIESANTMLSFIWWIAGFYWVTAGGQSLTRDSPQLYWLCITFLAFDVVIVLICVAVACLIGIAVCCCLPCILAILYVVADQEGATKEEIDQLPKYKFRIIKEFKKEGDIEESSRGIMTESDSEAATEHVIALEDAECCICLSAYDDGAELRELPCNHHFHCTCIDKWLQINATCPLCKFNILRTGNHHQEV 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo161g00016 373 ProSiteProfiles Zinc finger RING-type profile. 319 360 IPR001841 -
Pumo161g00016 373 SUPERFAMILY RING/U-box 306 365 - -
Pumo161g00016 373 CDD RING-H2_RNF6-like 318 360 - -
Pumo161g00016 373 Pfam Ring finger domain 318 360 IPR001841 -
Pumo161g00016 373 PANTHER TARGET OF ERK KINASE MPK-1 45 365 - -
Pumo161g00016 373 SMART ring_2 319 359 IPR001841 -
Pumo161g00016 373 FunFam E3 ubiquitin-protein ligase At1g12760 305 370 - -
Pumo161g00016 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 365 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo161g00016 7 371 C3H Transcription Factor Family AT1G68070 47.268 3.34e-111 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo161g00016 - - gmx:100785943 646.736