Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo161g00012 ATGAGTTTTGGGGGGCTTTCTAGAGACCAAACAAAGTCGGTAGTGGAGGTGGTAGGAATCGTAGCAGCAGATATTACTTACAGCAACGGTTCAAACCACAGCAACGATATAATGCCCTCTGGTGTAATCTCGCAGCCTCGTTTAGCCACTCCTACTTTGGCCAAATCCATGTTCAACTCCCCTGGACTTTCTCTTGCACTTCAAAGTGATATAGATGGACAAGGGGATGTGAACAGATTAATGCCCGAGAATTTTGAGCAAAATGGTTTGAGAAGGAACCGGGAAGAGGAGCATGAAAGCAGATCTGGCAGTGATAACATGGATGGTGCTTCTGGTGATGATTTTGATGCTGCCGACAACCCACCAAGAAAAAAACGCTATCACCGACACACTCCTCAGCAAATTCAAGAGCTTGAATCACTCTTCAAGGAGTGTCCTCACCCAGATGAGAAGCAAAGGCTTGAACTCAGCAGAAGGCTTAATTTGGAAACGAGGCAAGTAAAATTTTGGTTCCAAAATCGAAGAACACAAATGAAGACACAATTGGAACGGCACGAGAACTCGCTGCTGAGGCAAGAGAATGACAAGCTTAGAGCGGAGAACATGTCTATGAGGGAAGCCATGAGGAATCCCATATGCTCAAACTGTGGAGGTCCTGCGATGATTGGTGAGATTTCACTTGAAGAACAGCATCTCAGGATTGAGAATGCTAGATTGAAGGATGAGCTAGACCGTGTTTGTGCACTTGCTGGCAAGTTTTTGGGCCGCCCCATTTCTTCTCTAGCAAGCTCAATTGGGCCTCCATTGCCAAACTCAAGTTTGGAGCTTGGGGTTGGGAGCAATGGTTTTGGAGGGTTGAGCACTGTGCCTTCAACATTGCCTGATTTTGGGGTGGGGATATCAAGCCCCTTGGCCATGGTGTCACTTTCAACAAGACCAACAACAACAGCAACTGTGGTGACTCCTGGCTTTGACAGATCAGTGGAGAGGTCTATTGTTCTTGAACTTGCTTTGGCTGCAATGGATGAGTTGGTGAAGATGGCACAGACTGGGGAGCCTCTTTGGATCAGGAGTGGTTTGGAAGGGGGAAGAGAAATTCTCAACCATGAGGAGTACACAAGGACAATGACTCCTTGCATTGGCTTGAGACCAAATGGTTTTGTCACTGAGGCCTCTAGACAAACTGGCATGGTCATCATAAACAGCTTGGCCCTTGTTGAAACATTAATGGACTCAAATCGATGGTCAGAAATGTTCCCATGTATGATTGCTAGAACCTCAACAGCTGAAGTTATATCTAATGGAATAAATGGGACTAGAAATGGTGCCCTTCAGCTTATGCATGCTGAACTTCAAGTTCTTTCTCCCTTGGTTCCTGTTCGTGAGGTCAATTTTCTACGCTTTTGCAAGCAGCACGCAGAGGGGTTATGGGCAGTGGTAGATGTGTCCATAGATACCATCCGAGAAACTTCTGGTGCACCCACTTTTGTGAACTGTAGGAGGCTTCCTTCTGGTTGCGTGGTGCAAGATATGCCAAATGGTTACTCTAAGGTGACATGGGTGGAACATGCAGAATACGACGAAAGCCAAATTCACCAGCTCTACAGACCCTTGTTGAGCTCAGGCATGGGGTTTGGTGCACAACGTTGGGTTGCCACCCTTCAACGCCAATGCGAGTGCCTAGCCATTCTAATGTCCTCAGCAGTACCCTCTAGAGAACATTCAGCAATAAGCTCAGGTGGAAGGCGAAGCATGTTGAAGCTGGCGCAGCGCATGACGAACAATTTCTGTGCTGGTGTGTGTGCTTCCACAGTGCACAAGTGGAACAAGCTTAACGCTGGGAACGTGGGAGAAGACGTGAGGGTGATGACGAGGAAGAGCGTGGACGACCCCGGCGAGCCGCCGGGGATCGTCCTCAGCGCCGCCACCTCCGTCTGGCTCCCCGTCTCGCCGCAGAGACTCTTTGACTTCCTCCGCGACGAGAGGCTCCGAAGCGAGTGGGACATCCTCTCCAACGGTGGACCCATGCAAGAGATGGCTCACATTGCCAAGGGACAAGACCATGCTAACTGTGTCTCCCTCCTTAGAGCCAGTGCTATGAATGCGAACCAGAGCAGCATGTTGATTTTGCAGGAGACGTGCACAGACGCGTCGGGATCGCTTGTGGTGTACGCGCCGGTGGACATTCCGGCAATGCACGTCGTGATGAACGGCGGCGACTCTGCTTACGTGGCGCTCCTTCCGTCGGGGTTTGCGATCGTGCCCGACGGGTCCGGCGAGGAGCACGGCGGCGCGTCGCAGCAGAGGGAGAGTGGGTGCCTCCTGACGGTGGCGTTTCAGATCCTCGTGAACAGCCTCCCGACGGCGAAGCTCACGGTGGAGTCGGTGGAGACGGTGAACAACCTCATCTCGTGCACCGTGCAGAAGATAAAAGCAGCGCTTCACTGCGAGAGCTGA 2457 0.5096 MSFGGLSRDQTKSVVEVVGIVAADITYSNGSNHSNDIMPSGVISQPRLATPTLAKSMFNSPGLSLALQSDIDGQGDVNRLMPENFEQNGLRRNREEEHESRSGSDNMDGASGDDFDAADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSRRLNLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSMREAMRNPICSNCGGPAMIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLASSIGPPLPNSSLELGVGSNGFGGLSTVPSTLPDFGVGISSPLAMVSLSTRPTTTATVVTPGFDRSVERSIVLELALAAMDELVKMAQTGEPLWIRSGLEGGREILNHEEYTRTMTPCIGLRPNGFVTEASRQTGMVIINSLALVETLMDSNRWSEMFPCMIARTSTAEVISNGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGLWAVVDVSIDTIRETSGAPTFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQIHQLYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSAVPSREHSAISSGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVGEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHANCVSLLRASAMNANQSSMLILQETCTDASGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGSGEEHGGASQQRESGCLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo161g00012 818 FunFam Homeobox-leucine zipper protein GLABRA 2 335 559 - -
Pumo161g00012 818 Coils Coil 175 210 - -
Pumo161g00012 818 Gene3D - 111 197 - -
Pumo161g00012 818 SMART HOX_1 122 185 IPR001356 GO:0003677
Pumo161g00012 818 CDD homeodomain 123 181 IPR001356 GO:0003677
Pumo161g00012 818 Pfam Homeodomain 124 179 IPR001356 GO:0003677
Pumo161g00012 818 FunFam Homeobox-leucine zipper protein HDG1 111 197 - -
Pumo161g00012 818 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 120 815 IPR042160 -
Pumo161g00012 818 ProSitePatterns 'Homeobox' domain signature. 156 179 IPR017970 GO:0000981|GO:0006355
Pumo161g00012 818 ProSiteProfiles START domain profile. 326 563 IPR002913 GO:0008289
Pumo161g00012 818 CDD START_ArGLABRA2_like 330 559 - -
Pumo161g00012 818 ProSiteProfiles 'Homeobox' domain profile. 121 181 IPR001356 GO:0003677
Pumo161g00012 818 SUPERFAMILY Bet v1-like 329 560 - -
Pumo161g00012 818 SMART START_1 335 560 IPR002913 GO:0008289
Pumo161g00012 818 MobiDBLite consensus disorder prediction 88 104 - -
Pumo161g00012 818 Pfam START domain 335 560 IPR002913 GO:0008289
Pumo161g00012 818 SUPERFAMILY Homeodomain-like 107 181 IPR009057 -
Pumo161g00012 818 SUPERFAMILY Bet v1-like 588 811 - -
Pumo161g00012 818 MobiDBLite consensus disorder prediction 74 131 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo161g00012 58 818 Homeobox Transcription Factor Family AT3G61150 68.077 0.0 1032
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo161g00012 START 2.2e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo161g00012 K09338 - gmx:100787537 1486.47