Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo161g00011 ATGACAAAGGAGTGGTCTGATTCGATGTGCATTGATGATGATGATGATGACAAAGACAATCATAGTCATGCTAGTGAACATGAAGAAAATTGCATTTGTAACCCTTTCAAAGGAACCCCAAGAAATGGTGTTCAAGAGTTGGATCTAGAGGATCAAGAAGATACTTGTGCAAAGGGTGTTGCCCATGATAAAGCTCAAGTGAATCCTGAAGATGAAAAAGTAGTTTTTGAGTCCTGTCGACTGTTTGTCTGTAATCTACCATACACAACAATTGAGGAAGAACTGCAACAGCATGTCAGTAGTGAGCTCGTGCCTCCCAGTGAGTTTGGTGGTGGTGCCTTAAAGGTTCATCTGGTTGTTGATAAAAGTACAAAACTATCCAAAGGAATAGCATATATTCTTTTCTCAGGTCCAGAAATTGCAAAAAGGGCAAGAAAAAAGTTGCACCATTCAACCCTCCAAGGAAGACGGTTGTATGTTATGCAAGCCATACAAAGACCTTCAAACAATGAAGAGAACAATGTTTTGAAGGTCCAAAACTCCAAAACTCTCAAACAACGAAGAGTGGAAGAGAGGAAAGCAGCTGAAGCCAGAGGAGATACCAGAGCATGGAATAGTCTGTTCATGCGCCCTGATACAGTTGTGGAAAACATTGCTCGGAAATATGGCATTAGGAAAAGTGATTTACTTGATCGAGGAGCTGACGATCTTGCTGCGTGCATTGCTCTGGGAGAAACTCAAGTGATTTCAGAGACAAAAAAGGCACTTAAAAATGCTGGAGTGAATGTGGAGTCTTTGGAGGACTTTGCTAATAGTAAAGTTGATGGATTGAAAAGAAGTAACCATGTGATTTTAGTGAAGAACTTGCCCTATGGTTCAACAGAAAATGAACTTGCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAAACTTTGGCCCTGGTTGTTTTCCTCGAACCAGCAGAAGCTAAAGCAGCTTTTAGAGCTTTGGCATACAAGCGATACAAGGATGCTCCATTATACTTGGAGTGGGCTCCTTCAAATATTCTTGGTCAAAGCTCAACATCTAAAAATAATGAAATGAATAGTGGAATTGATGTGGATATTGATCCAGACAGAGTACAGGCTCGGACTCTGTTTGTCAAGAACCTAAATTTCAATACAACACATGAGAGTTTGAGGAAACACTTTAGTGAAAATATGAAAGAGGGAGCAATCTTGAGTGTCAAGGTTCTGAAGCATTTGAAAAATGGGAAAAGTGTTTCCACGGGGTATGGATTTGTTGAGTTTGACTCCAAAGAGACCGCTACAAGTGTTTACACAGATTTACAGGGTACTGTTTTGGACAGGCATGCTCTTATGTTACAACCTTGTCGAGTCAAGAATGAGGGACAAGTACAAAAGACAGTTGAGAAGGGCAAGAGTTCAACAAAATTGCTTGTAAAAGATGTTCCTTTTGAGGCAACAGAGAAGAGTCTGAGAGAATTGTTTAAACCATTTGGCGAGATTAAAAGCTTAAGGTTGCCAATGAAGTTTGGAGGTCATAGTCATAGAGGCTTTGCTTTTGTAGAATATGTTACTCCGCAGGAGGCAAAAAATGCTCGTTCAGCACTTGAACATACCCACCTGTTGGGCAGACATTTGAAGATAGAGAGCGTGAAAGTTGATCCGAGTTTGGATGAACTGCAGTCTCAAACAGCAGCTCAATTTACTCGACACAATGGATTTCAAAATGCTATGTTATCCAAGAAAAGAAAGCTCATTCAGTATCTTTGA 1797 0.4007 MTKEWSDSMCIDDDDDDKDNHSHASEHEENCICNPFKGTPRNGVQELDLEDQEDTCAKGVAHDKAQVNPEDEKVVFESCRLFVCNLPYTTIEEELQQHVSSELVPPSEFGGGALKVHLVVDKSTKLSKGIAYILFSGPEIAKRARKKLHHSTLQGRRLYVMQAIQRPSNNEENNVLKVQNSKTLKQRRVEERKAAEARGDTRAWNSLFMRPDTVVENIARKYGIRKSDLLDRGADDLAACIALGETQVISETKKALKNAGVNVESLEDFANSKVDGLKRSNHVILVKNLPYGSTENELAKMFGKFGSLDKIILPPTKTLALVVFLEPAEAKAAFRALAYKRYKDAPLYLEWAPSNILGQSSTSKNNEMNSGIDVDIDPDRVQARTLFVKNLNFNTTHESLRKHFSENMKEGAILSVKVLKHLKNGKSVSTGYGFVEFDSKETATSVYTDLQGTVLDRHALMLQPCRVKNEGQVQKTVEKGKSSTKLLVKDVPFEATEKSLRELFKPFGEIKSLRLPMKFGGHSHRGFAFVEYVTPQEAKNARSALEHTHLLGRHLKIESVKVDPSLDELQSQTAAQFTRHNGFQNAMLSKKRKLIQYL 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo161g00011 598 Gene3D - 6 177 IPR012677 -
Pumo161g00011 598 SUPERFAMILY RNA-binding domain, RBD 74 169 IPR035979 GO:0003676
Pumo161g00011 598 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 371 476 - -
Pumo161g00011 598 Gene3D - 480 582 IPR012677 -
Pumo161g00011 598 Gene3D - 276 372 IPR012677 -
Pumo161g00011 598 MobiDBLite consensus disorder prediction 1 29 - -
Pumo161g00011 598 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 484 562 IPR000504 GO:0003723
Pumo161g00011 598 CDD RRM6_RBM19_RRM5_MRD1 484 558 - -
Pumo161g00011 598 CDD RRM4_RBM19_RRM3_MRD1 282 353 - -
Pumo161g00011 598 SMART rrm1_1 385 463 IPR000504 GO:0003723
Pumo161g00011 598 SMART rrm1_1 80 161 IPR000504 GO:0003723
Pumo161g00011 598 SMART rrm1_1 485 558 IPR000504 GO:0003723
Pumo161g00011 598 SMART rrm1_1 283 350 IPR000504 GO:0003723
Pumo161g00011 598 FunFam Multiple RNA-binding domain-containing protein 1 273 370 - -
Pumo161g00011 598 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 165 IPR000504 GO:0003723
Pumo161g00011 598 Gene3D - 376 479 IPR012677 -
Pumo161g00011 598 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 483 556 - -
Pumo161g00011 598 MobiDBLite consensus disorder prediction 15 29 - -
Pumo161g00011 598 SUPERFAMILY RNA-binding domain, RBD 383 556 IPR035979 GO:0003676
Pumo161g00011 598 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 486 555 IPR000504 GO:0003723
Pumo161g00011 598 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 346 IPR000504 GO:0003723
Pumo161g00011 598 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 158 IPR000504 GO:0003723
Pumo161g00011 598 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 386 460 IPR000504 GO:0003723
Pumo161g00011 598 CDD RRM5_RBM19_like 385 463 IPR034423 -
Pumo161g00011 598 SUPERFAMILY RNA-binding domain, RBD 279 366 IPR035979 GO:0003676
Pumo161g00011 598 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 354 IPR000504 GO:0003723
Pumo161g00011 598 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 384 467 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo161g00011 379 579 Eukaryotic Initiation Factors Gene Family AT2G23350 25.714 1.60e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo161g00011 K14787 - gmx:100798742 798.89