LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo161g00002	ATGAAGCTGCAGCTCAAAATTGTTCTTGCTTTAGTTAGCTTGCTTTGGATTCAGAGCTCATTTTGTGATGAAACTTCTGATACATCAAGCTTAAACAAGTGGAGATGTAGATGTTCTTTCCAAAGGAACCAGAGCTACTCTCTTGCTAATTGTTCAAAGTCATGTGATTGCCGCTCAGATTCTGAAGAGAGTGCATCCGTATGGACATGCATATGTGATTCCAATGGGTTTCCCCAAGTGGCAGCAGATGGTCATAGCCCAAATTGCTTTGATGCTTGCAACTGCACCTGGGGAACCGTCAGCAGGCCAGGAGGTTCAAAGAAGCATGTTTCCAGCAAGATTGTTGTAGTTATACTATTAGTATGTGTTATATGCACAACCATGGCATTTCTTGTCTCACTTATATGCCATGTCTACCGAAGGGACAGATGTACTATTCAATCACCAATATTCTCAACGGATAAGGAAACAAGCAGTGGTAGTACCGCCAACTTAATTAGTCATAGGTCAGGGACTTCTTCAGTGCCAGAAACAAAATATGCAATAAATTCTCCAATTTATCATATCACAGGTTGCTTTCAGAAAGCCTCTTTCTTATTTGGGAGCCCAAAAGAAACTTATCATGGGAGTATTTTTCCATTTTCGTTAGCCGAACTGGAACATGCAACAGAAAACTTTTCATCTTCCAACCTAATTGGGGTAGGCGGAAGTAGTTATGTATACCATGGTCGGCTGAAAGATGGTAGCGATGTGGCAGTTAAACGACTAAAAGATCAAGGAGGGCCAGAAGCAGACTCTGCATTTTTCAAGGAGATTGAACTATTATCTAGACTTCACCATTGTCATTTGGTTCCTTTGCTTGGATACTGCTCCGAGTTAAAAGGAAAACATGTTCAGAGGTTACTAGTATTTGACTACATGGCCAATGGAAATTTGAGGGACTGTTTAGATGGAGTTTCTGGAAAACATGTCGATTGGGCTACTCGTGTTATGATTGCAATAGGAGCTGCAAGGGGCTTGGAGTATCTCCATGAAGCAGCTGCTCCAAGAATTCTTCATAGAGATGTCAAATCAACTAACATTCTTCTGGATGAAAATTGGCAAGCAAAGATAACTGATCTTGGCATGGCTAAAAACTTGAGATCTGATGATCTTCCCAGCTGTTCAAATTCTCCAGCAAGAATGCAGGGAACATTTGGCTATTTTGCACCTGAGTATGCCATTGTTGGTAAAGCTTCTCTTGAGTCAGATGTCTTCAGTTATGGGGTGGTTCTTCTTGAGCTTATCAGTGGTCGCCAACCCATCCATAAATCTACAGGCAAACAAGAAAGCCTTGTTATATGGGTATTTTAA	1353	0.4117	MKLQLKIVLALVSLLWIQSSFCDETSDTSSLNKWRCRCSFQRNQSYSLANCSKSCDCRSDSEESASVWTCICDSNGFPQVAADGHSPNCFDACNCTWGTVSRPGGSKKHVSSKIVVVILLVCVICTTMAFLVSLICHVYRRDRCTIQSPIFSTDKETSSGSTANLISHRSGTSSVPETKYAINSPIYHITGCFQKASFLFGSPKETYHGSIFPFSLAELEHATENFSSSNLIGVGGSSYVYHGRLKDGSDVAVKRLKDQGGPEADSAFFKEIELLSRLHHCHLVPLLGYCSELKGKHVQRLLVFDYMANGNLRDCLDGVSGKHVDWATRVMIAIGAARGLEYLHEAAAPRILHRDVKSTNILLDENWQAKITDLGMAKNLRSDDLPSCSNSPARMQGTFGYFAPEYAIVGKASLESDVFSYGVVLLELISGRQPIHKSTGKQESLVIWVF	450

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo161g00002	450	ProSiteProfiles	Protein kinase domain profile.	226	450	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo161g00002	450	ProSitePatterns	Protein kinases ATP-binding region signature.	232	254	IPR017441	GO:0005524
	Pumo161g00002	450	Pfam	Protein kinase domain	228	443	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo161g00002	450	FunFam	receptor-like serine/threonine-protein kinase NCRK	200	306	-	-
	Pumo161g00002	450	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	351	363	IPR008271	GO:0004672\|GO:0006468
	Pumo161g00002	450	Gene3D	Phosphorylase Kinase; domain 1	201	306	-	-
	Pumo161g00002	450	SMART	serkin_6	226	449	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo161g00002	450	FunFam	Os07g0541700 protein	307	398	-	-
	Pumo161g00002	450	PANTHER	OS01G0750732 PROTEIN	1	448	-	-
	Pumo161g00002	450	Gene3D	Transferase(Phosphotransferase) domain 1	307	450	-	-
	Pumo161g00002	450	SUPERFAMILY	Protein kinase-like (PK-like)	206	441	IPR011009	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo161g00002	1	448	Receptor kinase-like Gene Family	AT2G28250	52.863	1.91e-153	445

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XVI	Pumo161g00002		Pkinase	1.9e-39	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo161g00002	-		-	gmx:100817870	843.188