Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo160g00001 ATGTACCCCCCAATTCATCAGTGCCACAATGGGCACACAATTTGTTCCTGTAAAATAAGGGTGCACAATCGATGCCCCACTTGTAGAGAGGAGCTTGGAGATATTAGGTGCCTGTCACTGGAGAAGGTGGCTGAATCACTTGAGTTACCTTGCAAGTACTACTCCCTTGGATGTCCTGAAATCTTTCCATACTATAGCAAGCTTAAGCATGAGACAGTATGCAATTTTACACCATATAGTGGTCCTTATGCTGGATCAGAGTGCTCTGTTGTTGGGGACACTCCTGTCCTTGTTGCACGTTTGAGAGATGATCATAAGGTGGACATGCACACAGGATGCACATTCAACCATCGATATGTGAAGTCCAATCCTCCTGAAGTAGAGAATGCAACTTGGATGCTCACTGTATTTCATTGCTTTGGCCAATACTTCTGCCTTCACTTTGAAGCTTTCCAGCTTGGCATTGCTCCAGTTTACATGGCCATCCTTCAATTTATGGGACTCGTGGAAATCTTCACCGAAAATTGGGATGCATAA 537 0.4451 MYPPIHQCHNGHTICSCKIRVHNRCPTCREELGDIRCLSLEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFTPYSGPYAGSECSVVGDTPVLVARLRDDHKVDMHTGCTFNHRYVKSNPPEVENATWMLTVFHCFGQYFCLHFEAFQLGIAPVYMAILQFMGLVEIFTENWDA 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo160g00001 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 99 IPR013083 -
Pumo160g00001 178 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 105 171 IPR008974 GO:0005515
Pumo160g00001 178 Pfam Seven in absentia protein family 35 167 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pumo160g00001 178 ProSiteProfiles Zinc finger SIAH-type profile. 46 106 IPR013010 GO:0008270
Pumo160g00001 178 SUPERFAMILY TRAF domain-like 46 165 - -
Pumo160g00001 178 FunFam E3 ubiquitin-protein ligase SINAT3 43 101 - -
Pumo160g00001 178 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 161 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo160g00001 1 167 C3H Transcription Factor Family AT2G41980 79.167 5.59e-98 283