Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo15g00003 ATGGGAAGGATGCCATGCTGTAAGAAGGTAGGGTTAAAGAAAGGACCATGGAATCCGGAAGAAGACAAGAAGCTCGTGGCTTATGTTGAAAGCCATGGCCCTCGAAAGTGGCGTTCAGTGCCTGCCAAAGCGGGCCTTCAAAGATGTGGAAAGAGTTGCAGGCTGAGGTATATTAACTACCTAAACCCTAATATCAAACGAGGAAGCTTCAGCTTGGAGGAACATCGCACCATTGTTCAACTCCATGCTCTTCTTGGAAACAAATGGTCAATCATAGCCTCTCACCTGCCCAAGAGAACTGACAATGACATCAAGAACTACTGGAACACCAACATCAAGAAAAGACTCATCAAAAAGGGCTTAGATAACACTACCCACAAACCAATAAAATTGAACACCTTTCAAGTCTATGGTGGTGGTATCCATGACCAGTTCATGGATACCACCAACATGAGCCACGTGGCTCAATGGGAGAGTGCTCGACTCGAAGCCGAAGCCAGAGAATCTATGTTGCAATTTGGATCTCACCCTTCGCATCTCTCTAGGCTAATCTTAAGCAAAATCCCAACTCAACCTTTTCCTCCATCAGAATCACAATTAAGCAAACCCAATACAGCATATAACATGTATGCCCTCGTGCTTGCGACAAATCATAACCTTCAGCCATCGGTATCCACGTTGAGCATCCCCAGTAGTAAGATTCCTGCAGTCTCTACCAATGTTGAACAATTCACTGACCCTGGAAGCTCACTCTCTTATAAGAGTGATGGTAATATGATAGACAATGGTAGTCAGATGATGGAAGGTTATGCGACAAACTTTTATGATGATGACGTTATGATGGCTGTAGAAGCATTTAGAATAGCAGGATGTGAGAGTATTCAAGAATTGTTTGACAGGTCCAGTGCCAAGGAAGGTCTAATCAATGATTCTTTTGAAAGAGATGTGTAG 951 0.4364 MGRMPCCKKVGLKKGPWNPEEDKKLVAYVESHGPRKWRSVPAKAGLQRCGKSCRLRYINYLNPNIKRGSFSLEEHRTIVQLHALLGNKWSIIASHLPKRTDNDIKNYWNTNIKKRLIKKGLDNTTHKPIKLNTFQVYGGGIHDQFMDTTNMSHVAQWESARLEAEARESMLQFGSHPSHLSRLILSKIPTQPFPPSESQLSKPNTAYNMYALVLATNHNLQPSVSTLSIPSSKIPAVSTNVEQFTDPGSSLSYKSDGNMIDNGSQMMEGYATNFYDDDVMMAVEAFRIAGCESIQELFDRSSAKEGLINDSFERDV 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo15g00003 316 FunFam MYB transcription factor 68 129 - -
Pumo15g00003 316 CDD SANT 69 112 IPR001005 -
Pumo15g00003 316 Gene3D - 13 66 - -
Pumo15g00003 316 CDD SANT 16 61 IPR001005 -
Pumo15g00003 316 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo15g00003 316 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo15g00003 316 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Pumo15g00003 316 SMART sant 66 114 IPR001005 -
Pumo15g00003 316 SMART sant 13 63 IPR001005 -
Pumo15g00003 316 Gene3D - 69 133 - -
Pumo15g00003 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo15g00003 316 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo15g00003 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo15g00003 316 FunFam MYB-related transcription factor 13 66 - -
Pumo15g00003 316 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo15g00003 316 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 217 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo15g00003 1 191 MYB Transcription Factor Family AT3G01140 61.856 1.28e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo15g00003 Myb_DNA-binding 4.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo15g00003 K09422 - gmx:100817205 449.129