Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo15g00001 ATGATGGCCTCTCACATCCCTCAATGCTTGCTTTTGGCTATTATGATTGTTTCCTTTTTCAATTCAAGCCTTAGTTTTGCGAAGCAATCCAAGATAAATGGCTTGAAAATGAATTTTATTGATCGATGTTGGAGACCAAATCCTGAATGGAGGAAACATCGATCTCAATTAGCCACATGTTCCGTGGGCTATGCTGGCAAGATGACAAATAACATTGGTAAGGACCTTATCTATTATAAAGTTACTGATCCTAGTGATGATCCTATAAACCCTAAACTCGGCACGTTGAGGTATGGAGCTTCCGTGATTCAAGGTAAAGTGTGGATCACATTCCAAAGAGACATGCACATTAAATTACAGAAACCCCTTCTCATTAGTAGTTTCACCACCATTGATGGTCGAGGTGTTAACGTCAACATTGGTAATAATGCATGCTTAATGATCTTCAAGGCCACCAACATAATCATCCATGGCATTCGGGTTCATGATTGCAAACCTCAAGCCCCTGGGATCGTGATGGGGCCCGAAGGAAAGTTGATTCCTTTAGGCCACGTAGATGGGGATGCAATTAGATTGGTTACTGCTTCAAAGATTTGGATTGATCATAATACACTTTATGATTGCCAAGATGGTCTGCTTGATGTAACTCGAGGTTCCACTTATGTGACTATATCCAATAATTGGTTCAAAAACCAAGACAAGGTTATGCTTCTTGGGCATGATGATGGATATGTGAGAGACAAAAATATGAAGGTTACCGTTGTGTACAACCATTTTGGACCTAATTGCAATCAACGCATGCCAAGGATTCGCCATGGATATGCACATGTGGCCAACAATCTTTATCAAGGATGGGTGCAATATGCCATTGGTGGAAGCATGGAACCTAGTCTCAAAAGCGAAGCTAACCTCTTCATAGCACCAACAATAGGGAGTAAAGAGGTGACTTGGAGAAAGAGTAGTCATAAGAATGGGGATAGATGGGAATTTCATTCAGTGAGGGACGCATTTGAAAATGGAGCCTCCTTTGCGGTAACAAAAGGAGGACGTGTGCCAAAGCCAAATTATAACAAGGAACAGAGTTTTAAAATTGTTGATGCCAAATTTGTGAGATCATTGACACGCTCATCAGGCGTGTTACGATGCAATAAAACATCTATATATTGA 1167 0.4079 MMASHIPQCLLLAIMIVSFFNSSLSFAKQSKINGLKMNFIDRCWRPNPEWRKHRSQLATCSVGYAGKMTNNIGKDLIYYKVTDPSDDPINPKLGTLRYGASVIQGKVWITFQRDMHIKLQKPLLISSFTTIDGRGVNVNIGNNACLMIFKATNIIIHGIRVHDCKPQAPGIVMGPEGKLIPLGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTYVTISNNWFKNQDKVMLLGHDDGYVRDKNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWVQYAIGGSMEPSLKSEANLFIAPTIGSKEVTWRKSSHKNGDRWEFHSVRDAFENGASFAVTKGGRVPKPNYNKEQSFKIVDAKFVRSLTRSSGVLRCNKTSIY 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo15g00001 388 SMART amb_all 114 311 IPR002022 -
Pumo15g00001 388 Gene3D - 37 381 IPR012334 -
Pumo15g00001 388 PANTHER PECTATE LYASE 18-RELATED 34 385 IPR045032 GO:0030570
Pumo15g00001 388 Pfam Pectate lyase 123 305 IPR002022 -
Pumo15g00001 388 PRINTS Pollen allergen Amb family signature 85 110 IPR018082 -
Pumo15g00001 388 PRINTS Pollen allergen Amb family signature 328 352 IPR018082 -
Pumo15g00001 388 PRINTS Pollen allergen Amb family signature 288 307 IPR018082 -
Pumo15g00001 388 PRINTS Pollen allergen Amb family signature 359 382 IPR018082 -
Pumo15g00001 388 PRINTS Pollen allergen Amb family signature 186 207 IPR018082 -
Pumo15g00001 388 PRINTS Pollen allergen Amb family signature 266 285 IPR018082 -
Pumo15g00001 388 PRINTS Pollen allergen Amb family signature 122 138 IPR018082 -
Pumo15g00001 388 SUPERFAMILY Pectin lyase-like 31 381 IPR011050 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo15g00001 68 315 Polysaccharide Lyase AT5G09280 73.790 1.23e-144 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo15g00001 K01728 - gmx:100780437 693.73