Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo157g00002 ATGGATGGTCTAAGCTGGGATGCCTCATCACAACTTGTTGCTAACACACCGATCTTGTGGAGCACTCAGCCTCAAGACCTTGAAGGAGACTATCATAATTCCATGTCCCACCTAAGTTCAAGTGTTCTCAATCAAACAGGCTATCCATATCCCAGTTCTGAAAAAGTGAGGGGCATGGTTCAGTCATCCACTTCTGAGATAATGAGTATGATGCCAAACACAAATCTGCCACAAAGAACAGCAACCATGCCTGTGAAATCAGGAGCAGCTGGAGCCAGTTGGGAAGAAGCTTTAACATCCCAATCATGCCCGTCCCTCTCGGTGAATATGAACCAAACTAGCAATTATGTAGCGGATTTCAACATGGCCCACCAGCAGCAACTCCTTATCAATGGCACACAAAACGGCAAGGCTACTACCTGCTCTCTTGAGTCACTTGATTGCTTGCTTTCAGCTACTAATAATAGCAACACAGACACGTCTGTCGAAGATGATGGGATTTCCAAGATTTTATCTGACTGCAGAAACTTATGGAATAACTTCAGTTATGGCAGTGCAGCTTCCTCTGGTGAATCTGAGAGCAATGCTTCCAATGCTAGAAACAGTGACATGCGGTATCCATCAGTCAGTGAGCTGGATGAATCAGTGTCTCAAAGTTTCTCTGATCAATATCTCAGTCAAGGAAGAGTGTTAGATTCTGAAGTTATTTGCACAAAAAGGAGCAGTTCATGCTTCAGCATTGCTCAGAATTCTTCTGCCACTGAAGGTGGTTTCAGGCTTATCTCAGAGACTTCACCAAAGTCCAAGAGACCCAGATGGGATCATAAGTATCCTGGTTCATCAAATATCAACTTCCAGCAGCCAAATTCATCTGTGTCTCCTTCCTTTGAAGAACCTGATCCAGAAGCCATAGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCAGTGAACTTGGGCCTGGAAGTGGTGGAAAAGCCTAAAAGGAAGAATGTTAGGATATCAACTGATCCACAGACTGTGGCTGCCAGGCAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAACTACCTCAAGTTTCTCAGATCACAAGTCAAAGCATTAGAAAATCTAGGTAACAAGCTTGAAACAATGAATTGTCCTCCTACTAACATAGCCTTCTCTTTCAACCCTTCTTTTCCCATACAAACACATTTCCCCATCCAAAACCCTAGCAGCCACATCCAATATTCCAAGGGTTGA 1317 0.4389 MDGLSWDASSQLVANTPILWSTQPQDLEGDYHNSMSHLSSSVLNQTGYPYPSSEKVRGMVQSSTSEIMSMMPNTNLPQRTATMPVKSGAAGASWEEALTSQSCPSLSVNMNQTSNYVADFNMAHQQQLLINGTQNGKATTCSLESLDCLLSATNNSNTDTSVEDDGISKILSDCRNLWNNFSYGSAASSGESESNASNARNSDMRYPSVSELDESVSQSFSDQYLSQGRVLDSEVICTKRSSSCFSIAQNSSATEGGFRLISETSPKSKRPRWDHKYPGSSNINFQQPNSSVSPSFEEPDPEAIAQMKEMIYRAAAFRPVNLGLEVVEKPKRKNVRISTDPQTVAARQRRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALENLGNKLETMNCPPTNIAFSFNPSFPIQTHFPIQNPSSHIQYSKG 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo157g00002 438 Coils Coil 376 403 - -
Pumo157g00002 438 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 402 IPR036638 GO:0046983
Pumo157g00002 438 MobiDBLite consensus disorder prediction 186 205 - -
Pumo157g00002 438 MobiDBLite consensus disorder prediction 279 296 - -
Pumo157g00002 438 Gene3D - 342 405 IPR036638 GO:0046983
Pumo157g00002 438 SMART finulus 343 392 IPR011598 GO:0046983
Pumo157g00002 438 MobiDBLite consensus disorder prediction 258 298 - -
Pumo157g00002 438 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 337 386 IPR011598 GO:0046983
Pumo157g00002 438 MobiDBLite consensus disorder prediction 186 210 - -
Pumo157g00002 438 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 154 435 IPR045843 GO:0003700|GO:0006355
Pumo157g00002 438 Pfam Helix-loop-helix DNA-binding domain 347 386 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo157g00002 108 429 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 50.000 3.74e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo157g00002 HLH 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo157g00002 - - gmx:100793830 764.992