Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo153g00003 ATGGGTAGAGGGAGGGTTGAGCTGAAGAGGATTGAGAACAAAATCAATCGTCAAGTTACCTTCTCGAAAAGAAGGAATGGTTTGGTGAAGAAAGCCAAAGAACTCTCAGTGCTTTGTGATGCTGAGGTTGCCCTTGTCATTTTCTCAACTCGTGGGAAGCTGATCACCTTTCCAAATGATGCTGAAAGTATTATGAAAACCTATGATCGATACCAGAGGTACTCTTTAAATGATAACAAGGTTGAACTTCAAAATCAGGGCTGGTACCAAGAAAGGTCAAAGCTACACGCAAAGTACGAGGCTCTTCAAAGGACACTGAGGCATTTGCATGGGGAAGATCTTGGACCACTGAACATAAAAGAGTTGCAAAATCTTGAGAAGCAACTTGAAGAAGCTTTATCACAAACTAGGCAGAGGAAGACACAAATTATGATTGAACAAGTGGAAGAGCTTCACAGAAAGGAACGCCATCTTGGAGACCTGAACAAGGACCTTAGACTCAAGCTTGAACCTTATGGATTTAATCTGAAAGCTATTGAAAGTTTGTGGGGCTCTACCTCTGCTGCTGGAGATGGGAGCTTTCCTTTGGAGCCTTCCAAAACCAACATTATGAATTTACAAGCTCAACCTTTCTTGCAAATAGGGTACCCTGTTCAAGGTGAGCCATCCATTGCCCCAAAGAGCATGGCTAGTGAGACTACTTTTCAGGGATGGTTCCTGTGA 723 0.4302 MGRGRVELKRIENKINRQVTFSKRRNGLVKKAKELSVLCDAEVALVIFSTRGKLITFPNDAESIMKTYDRYQRYSLNDNKVELQNQGWYQERSKLHAKYEALQRTLRHLHGEDLGPLNIKELQNLEKQLEEALSQTRQRKTQIMIEQVEELHRKERHLGDLNKDLRLKLEPYGFNLKAIESLWGSTSAAGDGSFPLEPSKTNIMNLQAQPFLQIGYPVQGEPSIAPKSMASETTFQGWFL 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo153g00003 240 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo153g00003 240 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo153g00003 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo153g00003 240 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Pumo153g00003 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo153g00003 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo153g00003 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo153g00003 240 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Pumo153g00003 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo153g00003 240 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Pumo153g00003 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo153g00003 240 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Pumo153g00003 240 Coils Coil 119 142 - -
Pumo153g00003 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo153g00003 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 159 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo153g00003 1 240 MADS-box Gene Family AT2G45650 58.333 1.31e-93 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo153g00003 K-box 1.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo153g00003 K09264 - gmx:100797002 351.673