Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo153g00001 ATGGTGAGAGGAAAGACTCAGATGAGGCGCATAGAGAACGCCACAAGCAGGCAAGTCACCTTCTCAAAGCGGCGTAATGGGTTGCTAAAGAAGGCCTTTGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCTCCAAGAGGAAAGCTTTATGAATTTGCAAGCTCCAGCATGCAGGAGACAATTGAACGCTACCGCAGGCATAACAGGAGTGCTCAAACAGTGAACAGATCTGATGAACAAAATATGCAGCATTTGAAGCAAGAAACAGCAAACTTGATGAAGAAGATTGAGCTTCTTGAAGCTTCAAAACGGAAGCTCTCGGGAGAAGGTTTGGGGTCATGCTCATTAGAAGACCTGCAACAGATAGAACAACAGTTGGAAAGGAGTGTAAGCAATGTTCGTGCAAGAAAGAATCAGGTTTACAAGGAACAAATTGAGCAACTAAAAGAAAAGGAAAGAACCCTACATGCTGAAAATGCCAGGCTGTGTGAGCAGTATGGTATCCAGCCACAGCCAGCAACAAAGGATGTGAGAGAAAATCAACCCTATGCAGAAAGCAGTCCAAGTTCAGAAGTGGAGACTGAGTTGTTCATTGGACTACCCAGGTCTAGCTAG 630 0.446 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQETIERYRRHNRSAQTVNRSDEQNMQHLKQETANLMKKIELLEASKRKLSGEGLGSCSLEDLQQIEQQLERSVSNVRARKNQVYKEQIEQLKEKERTLHAENARLCEQYGIQPQPATKDVRENQPYAESSPSSEVETELFIGLPRSS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo153g00001 209 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 175 - -
Pumo153g00001 209 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Pumo153g00001 209 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo153g00001 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo153g00001 209 SUPERFAMILY SRF-like 3 84 IPR036879 GO:0003677|GO:0046983
Pumo153g00001 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo153g00001 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo153g00001 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo153g00001 209 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo153g00001 209 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Pumo153g00001 209 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo153g00001 209 MobiDBLite consensus disorder prediction 171 209 - -
Pumo153g00001 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo153g00001 209 FunFam MADS-box protein SOC1 14 95 - -
Pumo153g00001 209 Coils Coil 73 107 - -
Pumo153g00001 209 MobiDBLite consensus disorder prediction 179 198 - -
Pumo153g00001 209 Coils Coil 121 170 - -
Pumo153g00001 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo153g00001 1 156 MADS-box Gene Family AT2G45660 77.564 2.45e-86 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo153g00001 K-box 1.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo153g00001 - - gmx:100037477 381.333