Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo149g00016 ATGGTGAAGGAGAAAAACAACGTGACGAAGCACAAGAAGCCAAACAATGCCGACGAGGTTCACTTCCGCGGCGTCAGAAAGAGACCATGGGGCCGCTACGCCGCCGAGATCCGTGACCCCGGCAAGAAGAGCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGAAGCCGCCCGAGCCTACGACGCCGCCGCTCGCAGCTTCCGCGGCCCCAAAGCCAAGACCAATTTCCCCCCTCTCCCCGACAACAACAACAAAAACAGCGTTAACGTTAACTACGACAGTCCCAGTCAGAGCAGCACCGTGGAGTCCTCCACCCCGGAGCGTGAAGTCACGCGCCGCGCCGCCCCCGCCATCGACCGCTTCCCCTTCCTCCCCATCCAGCAGCAACTCCTCGTGACCCCCGTCGCATCCATGCGCCCGGTTTTCTTCCTCGACCGGGCCCACTTCATGACCCAGCCGTTCCCTGTCCGCTTCGAACCCGGTCCGGTCCAGAGCGACTCCGACTCCTCCTCCGTCGTCGTCGATTGTCAGCCCAAAAGAGAGCTCAATCTCGATCTTAACCTGGCTCCGCCTAATGAATATTAA 588 0.6156 MVKEKNNVTKHKKPNNADEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARSFRGPKAKTNFPPLPDNNNKNSVNVNYDSPSQSSTVESSTPEREVTRRAAPAIDRFPFLPIQQQLLVTPVASMRPVFFLDRAHFMTQPFPVRFEPGPVQSDSDSSSVVVDCQPKRELNLDLNLAPPNEY 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo149g00016 195 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Pumo149g00016 195 SUPERFAMILY DNA-binding domain 21 78 IPR016177 GO:0003677
Pumo149g00016 195 MobiDBLite consensus disorder prediction 70 110 - -
Pumo149g00016 195 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 146 - -
Pumo149g00016 195 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Pumo149g00016 195 CDD AP2 21 78 IPR001471 GO:0003700|GO:0006355
Pumo149g00016 195 MobiDBLite consensus disorder prediction 78 106 - -
Pumo149g00016 195 FunFam Ethylene-responsive transcription factor 2 20 79 - -
Pumo149g00016 195 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Pumo149g00016 195 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Pumo149g00016 195 MobiDBLite consensus disorder prediction 1 25 - -
Pumo149g00016 195 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
Pumo149g00016 195 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo149g00016 19 192 AP2-EREBP Transcription Factor Family AT5G44210 54.696 6.42e-51 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo149g00016 AP2 1.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo149g00016 K09286 - gmx:100775465 305.834