Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo149g00015 ATGAGTAGTGTTTGTTCAGAACACAAATTCCAATTTCAACCCTCCCACCAACTTCTCTCCCTCAAGAAATCCCTGAGGGACATTGACATTGACATCCCACCAAGGAAGCTCCTCACCCGCCGCTCCGCCGCCGTCCACGACGGCTCCGGCGACATGTTTTCCGACGGGCACAAATACCTCCCCCAGAATGGCTCCACCGACTCCGACGGCGACCCCTACTCCTCCGACGAATTCCGCATGTTCGAGTTCAAGGTCCGGCGCTGCACTCGCAGCCGGAGTCATGACTGGACAGATTGTCCCTTTGCACATCCCGGCGAGAAGGCCCGCCGCCGAGACCCTCGCCGGTTTCATTACTCTGGGACAGTCTGTCCAGAGTTTCGCCGCGGCCAGTGCGGCCGCGGTGATGCATGTGAGTTTTCCCATGGGGTGTTTGAGTGCTGGCTGCACCCTTCAAGGTATAGAACCGAGGCTTGCAAGGATGGGAAGAATTGCAAGCGAAAAGTTTGCTTCTTTGCTCACACCCCTCGCCAACTCAGGGTTTTGCCTCCTAATGAAAATAGCAACAAGAAAAAGTGCACCAATATAAGTCCTCATAATAACAATAACAACAACAACCATTGTTGTTTGTTTTGTCATCGCTCTTCTTCTACTCGTTCACCAACTTCTACCTTGTTTGGCATGTCTCATTTTTCTCCTACATTGTCATCACCACCTTCTCCTTCTTCCCCTTCTAGGTTTGAGACCAACCATCACCCTGGTGTTGTGAAGTACAAGGATGTTTTCTCTGAGCTTATGTGTTCCATGGAGGGTTTGAATTTTGGTGAGGCTTCTAAGCCTCACAATTTGCCTTGGCTTGATGTTTCTGAGGATCAAAAACAGTTCAATATTCTTTCACCAACCATCACTACTTGTGGAAGCTTTTCCAATAATGGGAATGGAAGATTTTTGAGGGAAGAAAGTGGGTTTGCTGATGATGTCATTGCCCCAGATCTCGCGTGGGTGAATGAATTGCTGATGTAG 1020 0.4961 MSSVCSEHKFQFQPSHQLLSLKKSLRDIDIDIPPRKLLTRRSAAVHDGSGDMFSDGHKYLPQNGSTDSDGDPYSSDEFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEFRRGQCGRGDACEFSHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHTPRQLRVLPPNENSNKKKCTNISPHNNNNNNNHCCLFCHRSSSTRSPTSTLFGMSHFSPTLSSPPSPSSPSRFETNHHPGVVKYKDVFSELMCSMEGLNFGEASKPHNLPWLDVSEDQKQFNILSPTITTCGSFSNNGNGRFLREESGFADDVIAPDLAWVNELLM 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo149g00015 339 ProSiteProfiles Zinc finger C3H1-type profile. 118 144 IPR000571 GO:0046872
Pumo149g00015 339 MobiDBLite consensus disorder prediction 230 249 - -
Pumo149g00015 339 FunFam Zinc finger CCCH domain-containing protein 66 75 143 - -
Pumo149g00015 339 MobiDBLite consensus disorder prediction 230 248 - -
Pumo149g00015 339 MobiDBLite consensus disorder prediction 52 73 - -
Pumo149g00015 339 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 142 IPR000571 GO:0046872
Pumo149g00015 339 Gene3D - 118 181 - -
Pumo149g00015 339 PANTHER UNKEMPT FAMILY MEMBER 57 338 IPR045234 -
Pumo149g00015 339 SMART c3hfinal6 152 175 IPR000571 GO:0046872
Pumo149g00015 339 SMART c3hfinal6 117 143 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo149g00015 48 187 C2H2 Transcription Factor Family AT5G12850 57.447 1.43e-53 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo149g00015 zf-CCCH 7.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo149g00015 K23047 - gmx:100820375 582.793