Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo149g00005 ATGCCTGCTCAGAAGCGTTCCTTCCCTGATTCTCCTAACGATCACCACCGCCACGCCAAACAACGCCACGAAGAACAAAAAACAGAAGCAGAAGAAGAAGAAGAAGAAGAAGCACAACAACAGCAACAAGAAGAAGAAGAAGAGGATAATAATAAATCAGATGATTCTCACCACGCACCATCCTCTCCCTCCGAAGACAAATCCGAATATGTGTATGTAGAACTTCTGGAAATACGCAAAGAAGTTCAATGTCCAATTTGCCTTGGTATTATTAAGAAAACAAGAACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCAATGCGACTAGGGAACAATGAATGCCCCGCTTGTCGCACGCACTGTGCCAGTCGTCGTTCTTTGAGAGATGATCCAAACTATGATGCCCTAATTGCAGCTTTATATCCGGATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGACAAGAACCGCAATAAGCTGATTCAGGCTTCAATTGCAAAAGTTGTTCAACGACAATCTGAAGCACTGGTTAAGAGACGTAGAGATACACCAGGTTCATTTGTGACAAGATCACAGCGCAATCAACGAAATGTTCTCTCTAGGAGACAAAACCAAGTGATAGATAATCAAGGATCTGAAGATAACGAGGAGGAAAATGACAATAATGAAAAGGACTCATCTTCCACAGATGAGCGATGTACAGAACTCAGGCAGAGAAGGCGAAAGAGGCGGACCAGAGGTCGCCCTTCTCAGCCCTCATCATCAACAGCAAGTCCTGATGGTGGATGCATAGAAAGTGACTTGGATATAAGTCGAGAAATTCGAGGAATTTCTTCTAGATCTGTGTCAAAACCTCAAAAACTAACTTGGGGAAGGGGTGGTTTTAGGAGTCACACCCGGCATGGCAGTGGCAATGGTAGCAGTAGCAAAAGTTCCCGCAGTAGTCGCGTGGCTAAGTTAGTTGATTATCTCCGTAGCTTGAATGAAAACACTGATGAGTTAGATATCCATCTCATTCTTTTGTCTTTGGACAAACAAAGTACACCAAACTTGCAGCAGCCACACCTTTGCTGTCGGCCAACATTGTCTGTGAAGCACCTTTGTGAATATGTTGCTCGACAGACACCTTTGCCGGTTGAAGAAGTTGAGATATTGGCAGTAAAAGGGTGCTGCAGTACAGTTTGTGACAAGAAGTCATTTGATGAAACCTCATCCTCTGATGAGCTAACTACGCTGGTTATAGATCCTAGCAAAGATGAACTGGAAACTTTGCAAGGGAATGAATCTTTGGCAGGGCTTAAATCTAAATGCATATCTAAAAGGGAGCATTTGATTCTGGCATACAGGCAGAAGGAATGA 1389 0.4348 MPAQKRSFPDSPNDHHRHAKQRHEEQKTEAEEEEEEEAQQQQQEEEEEDNNKSDDSHHAPSSPSEDKSEYVYVELLEIRKEVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEDKNRNKLIQASIAKVVQRQSEALVKRRRDTPGSFVTRSQRNQRNVLSRRQNQVIDNQGSEDNEEENDNNEKDSSSTDERCTELRQRRRKRRTRGRPSQPSSSTASPDGGCIESDLDISREIRGISSRSVSKPQKLTWGRGGFRSHTRHGSGNGSSSKSSRSSRVAKLVDYLRSLNENTDELDIHLILLSLDKQSTPNLQQPHLCCRPTLSVKHLCEYVARQTPLPVEEVEILAVKGCCSTVCDKKSFDETSSSDELTTLVIDPSKDELETLQGNESLAGLKSKCISKREHLILAYRQKE 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo149g00005 462 MobiDBLite consensus disorder prediction 29 50 - -
Pumo149g00005 462 Coils Coil 153 173 - -
Pumo149g00005 462 MobiDBLite consensus disorder prediction 9 28 - -
Pumo149g00005 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 147 IPR013083 -
Pumo149g00005 462 SMART ring_2 84 123 IPR001841 -
Pumo149g00005 462 CDD RING-HC_RING1-like 81 146 - -
Pumo149g00005 462 MobiDBLite consensus disorder prediction 197 220 - -
Pumo149g00005 462 MobiDBLite consensus disorder prediction 310 325 - -
Pumo149g00005 462 MobiDBLite consensus disorder prediction 51 68 - -
Pumo149g00005 462 ProSitePatterns Zinc finger RING-type signature. 100 109 IPR017907 -
Pumo149g00005 462 Pfam Zinc finger, C3HC4 type (RING finger) 83 123 - -
Pumo149g00005 462 MobiDBLite consensus disorder prediction 1 68 - -
Pumo149g00005 462 PANTHER OS11G0578200 PROTEIN 1 461 IPR044592 -
Pumo149g00005 462 SUPERFAMILY RING/U-box 69 155 - -
Pumo149g00005 462 MobiDBLite consensus disorder prediction 182 325 - -
Pumo149g00005 462 ProSiteProfiles Zinc finger RING-type profile. 84 124 IPR001841 -
Pumo149g00005 462 Coils Coil 13 52 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo149g00005 77 147 C3H Transcription Factor Family AT3G23060 35.135 6.13e-07 49.7