Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo147g00262 ATGTCAGATATTAAAACTCTCCGCAACATTGCGATTATTGCGCACGTTGACCATGGTAAAACCACTCTTGTAGACAAACTTTTGCAACAATCAGGTGCACTCGGTGATCGCGCGGGCGAGATTGAGCGTGTAATGGATTCTAATGCGCTTGAGTCTGAGCGCGGTATTACCATTCTTGCAAAAAACACTGCAATCAAATGGTTAGATAAACGTACCAATACTGAATACCGCATTAACATCGTCGACACCCCAGGGCATGCTGACTTTGGCGGTGAAGTTGAACGTGTAATGTCTATGGTTGACTGCGTACTACTTCTTGTTGACTCACAAGACGGTCCAATGCCACAAACTCGCTTTGTAACATCTAAAGCGTTTGCTCGTGGTTTAAAACCAATTGTTGTATTAAATAAAGTTGACCGTCCAGGCGCACGTCCTGATTGGGTAATGGATCAAGTATTTGATTTGTTCGACAACCTTGGCGCAACAGATGAGCAATTAGACTTCCCAGTTGTTTATGCTTCAGGCTTAAACGGTATTGCGGGTCTTGAAGTAGATAACTTGGCGCCAGACATGACGCCATTGTTTGAAACAATTGTTGACATCGTTGAACCACCTAAGGTTGATGTTGATGGTCCATTCCAAATGCAAATTTCATCTCTTGACTATAATAGTTTCGTTGGTGTAATTGGTATTGGTCGTATTCAACGTGGTTCTGTGAAAACGAATACACAAGTTACTGTGATCGACAAAGAAGGTAAAACTCGTAACGGTCGTATCCTAAAAATCATGGGTTACCATGGTCTTGACCGCGTAGACGTTGAAGATGCTTCTGCTGGTGATATCGTATGTATTACTGGTCTTGATGCACTTAACATTTCTGACACAATTTGTGATCCGAAAAATGTTGAAGCAATGCCTGCTTTGTCTGTAGATGAACCTACAGTTTCGATGACATTCCAAGTAAACAACTCACCGTTTGCTGGTCGCGAAGGTAAATTCGTAACTTCACGTAATATTCGTGAACGTCTTGACCGCGAATTGATTCACAACGTAGCTTTACGTGTTGAAGATACTGAATCTCCAGACCGTTTCAAAGTTTCTGGTCGTGGTGAGCTTCATTTATCTGTTCTTATTGAGAACATGCGTCGTGAAGGCTTCGAGATGGGTGTATCTCGTCCTGAAGTAATCATGAAAGAAATTGATGGTCAAATTCAAGAGCCATATGAAAATGTAACTTTTGACGTTGAAGAACAACATCAAGGTTCAATCATGGAGCAAATGGGCTTCCGTAAAGGCGAAATGACCAATATGGAACTTGACGGCAAAGGTCGTATCCGTATTGAAGCAACTGTTCCTTCACGTGGCTTAATCGGTTTCCGTTCTGAATTCCTAACCATTACTTCTGGTACTGGTATTATGACTTCAAGCTTCTCTCATTATGGTCCAGCGAAAGCAGGTACTGTGGCGAAGCGTCAAAACGGTGTACTTATTTCAATGGTTAACGGTACTTGCTTAGCGTTTGCATTGTTTACATTACAAGACCGTGGTCGTCTATTTGCTGAACCACAGTTAGAAGTTTATGAAGGCATGATCGTGGGTATGAACTCACGTTCTGACGACATGACTGTTAACCCAACTAAAGCAAAACAGTTAACAAATATGCGTGCATCTGGTACAGATGAAGCATTAACGTTAACACCTGCGATTCGTTTCACGCTTGAACAAGCGCTTGAATTCATCGAAGATGACGAATTAGTTGAAGTGACACCTAAGTCAGTTCGTATTCGTAAACGTTGGTTGACTGAAAACGAACGTAAACGTAACCGTGGAAAATAA 1836 0.4188 MSDIKTLRNIAIIAHVDHGKTTLVDKLLQQSGALGDRAGEIERVMDSNALESERGITILAKNTAIKWLDKRTNTEYRINIVDTPGHADFGGEVERVMSMVDCVLLLVDSQDGPMPQTRFVTSKAFARGLKPIVVLNKVDRPGARPDWVMDQVFDLFDNLGATDEQLDFPVVYASGLNGIAGLEVDNLAPDMTPLFETIVDIVEPPKVDVDGPFQMQISSLDYNSFVGVIGIGRIQRGSVKTNTQVTVIDKEGKTRNGRILKIMGYHGLDRVDVEDASAGDIVCITGLDALNISDTICDPKNVEAMPALSVDEPTVSMTFQVNNSPFAGREGKFVTSRNIRERLDRELIHNVALRVEDTESPDRFKVSGRGELHLSVLIENMRREGFEMGVSRPEVIMKEIDGQIQEPYENVTFDVEEQHQGSIMEQMGFRKGEMTNMELDGKGRIRIEATVPSRGLIGFRSEFLTITSGTGIMTSSFSHYGPAKAGTVAKRQNGVLISMVNGTCLAFALFTLQDRGRLFAEPQLEVYEGMIVGMNSRSDDMTVNPTKAKQLTNMRASGTDEALTLTPAIRFTLEQALEFIEDDELVEVTPKSVRIRKRWLTENERKRNRGK 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo147g00262 611 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Pumo147g00262 611 PRINTS GTP-binding elongation factor signature 53 61 IPR000795 GO:0003924|GO:0005525
Pumo147g00262 611 PRINTS GTP-binding elongation factor signature 79 89 IPR000795 GO:0003924|GO:0005525
Pumo147g00262 611 PRINTS GTP-binding elongation factor signature 95 106 IPR000795 GO:0003924|GO:0005525
Pumo147g00262 611 PRINTS GTP-binding elongation factor signature 131 140 IPR000795 GO:0003924|GO:0005525
Pumo147g00262 611 SMART EFG_C_a 403 491 IPR000640 -
Pumo147g00262 611 Gene3D Elongation Factor G (Translational Gtpase), domain 3 314 598 - -
Pumo147g00262 611 CDD BipA_III 313 391 IPR047043 -
Pumo147g00262 611 FunFam GTP-binding protein TypA 491 578 - -
Pumo147g00262 611 SUPERFAMILY EF-G C-terminal domain-like 406 521 IPR035647 -
Pumo147g00262 611 NCBIfam translational GTPase TypA/BipA 7 607 IPR006298 GO:0003924|GO:0005525
Pumo147g00262 611 SUPERFAMILY EF-G C-terminal domain-like 310 395 IPR035647 -
Pumo147g00262 611 Hamap 50S ribosomal subunit assembly factor BipA [bipA]. 5 609 IPR006298 GO:0003924|GO:0005525
Pumo147g00262 611 Gene3D Translation factors 207 307 - -
Pumo147g00262 611 CDD TypA_BipA 7 205 IPR047041 -
Pumo147g00262 611 FunFam GTP-binding protein TypA 207 307 - -
Pumo147g00262 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 227 IPR027417 -
Pumo147g00262 611 Gene3D bipa protein 491 607 IPR042116 -
Pumo147g00262 611 Gene3D - 4 206 IPR027417 -
Pumo147g00262 611 Pfam Elongation factor G C-terminus 404 485 IPR000640 -
Pumo147g00262 611 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 4 181 - -
Pumo147g00262 611 CDD BipA_TypA_C 406 484 IPR035651 -
Pumo147g00262 611 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 206 IPR000795 GO:0003924|GO:0005525
Pumo147g00262 611 FunFam GTP-binding protein TypA 4 206 - -
Pumo147g00262 611 NCBIfam small GTP-binding protein domain 8 161 IPR005225 GO:0005525
Pumo147g00262 611 SUPERFAMILY Translation proteins 190 308 IPR009000 -
Pumo147g00262 611 Gene3D - 397 490 - -
Pumo147g00262 611 Pfam Elongation factor Tu domain 2 227 297 IPR004161 GO:0005525
Pumo147g00262 611 FunFam GTP-binding protein TypA 397 490 - -
Pumo147g00262 611 Pfam Elongation factor Tu GTP binding domain 6 202 IPR000795 GO:0003924|GO:0005525
Pumo147g00262 611 CDD BipA_TypA_II 213 306 IPR047042 -
Pumo147g00262 611 FunFam GTP-binding protein TypA 314 418 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo147g00262 2 140 Eukaryotic Initiation Factors Gene Family AT3G22980 41.135 2.85e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo147g00262 K06207 - acb:A1S_2835 1096.26