Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo147g00217 ATGGCTCGTATTGCCGGTGTAAACATTCCGGATAACAAGCATGCTGTTATCTCCCTCACGTATATCTTTGGTATCGGTCGCCACACTGCTAAAAACATTTTAGCTGCTGTTGGAATTGCACCAACTACTAAAATTCGTGAATTGGATGATGCTCAACTTGATGCGATTCGTACAGAAATTACTAAGGTTCCGACCGAAGGTGATTTACGTCGCGAAATTTCCATGAACATTAAACGTTTAATGGATTTAGGCTGCTACCGCGGTCTTCGTCATCGTCGCAGCTTGCCTGTCCGTGGACAACGCACCAAAACTAACGCACGTACCCGTAAAGGTCCGCGCAAACCTATTAAGAAATAA 357 0.4454 MARIAGVNIPDNKHAVISLTYIFGIGRHTAKNILAAVGIAPTTKIRELDDAQLDAIRTEITKVPTEGDLRREISMNIKRLMDLGCYRGLRHRRSLPVRGQRTKTNARTRKGPRKPIKK 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo147g00217 118 Gene3D - 1 71 - -
Pumo147g00217 118 SUPERFAMILY S13-like H2TH domain 2 114 IPR010979 GO:0003676
Pumo147g00217 118 Pfam Ribosomal protein S13/S18 65 108 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pumo147g00217 118 Pfam Ribosomal protein S13/S18 3 62 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pumo147g00217 118 Gene3D 30s ribosomal protein s13, domain 2 72 118 IPR027437 -
Pumo147g00217 118 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 2 110 - -
Pumo147g00217 118 Hamap 30S ribosomal protein S13 [rpsM]. 1 118 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pumo147g00217 118 ProSiteProfiles Ribosomal protein S13 family profile. 4 111 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pumo147g00217 118 FunFam 30S ribosomal protein S13 1 71 - -
Pumo147g00217 118 FunFam 30S ribosomal protein S13 72 118 - -
Pumo147g00217 118 ProSitePatterns Ribosomal protein S13 signature. 87 100 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pumo147g00217 118 MobiDBLite consensus disorder prediction 92 118 - -
Pumo147g00217 118 NCBIfam 30S ribosomal protein S13 3 114 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pumo147g00217 118 PIRSF RPS13p_RPS13a_RPS18e_RPS13o 1 118 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo147g00217 3 107 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 27.344 2.90e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo147g00217 K02952 - acb:A1S_3059 226.868