Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo147g00214 ATGGCTAAAGTTGAACAAAACGAAGGTCTTGTTGAAAAGCTGGTTGCCGTTGATCGTGTAGCCAAAGTTGTTAAGGGTGGTCGTATCTTCTCTTTCACAGCATTGACTGTGGTAGGTGATGGTAATGGTCGTGTAGGTTTTGGTCGTGGTAAAGCACGTGAAGTTCCAGCTGCTATTTCTAAAGCACTTGAAGCTGCACGTCGTAACATGATCACGGTTGACCTTGCAGGTACAACTCTGCAACACCCTGTGAATGCTCGTCATGGTGCAAGCCGTGTATACATGCAACCTGCTTCTGAAGGTACTGGCGTAATTGCTGGTGGTGCTATGCGTGCCGTTCTTGAAGCTGCTGGTGTACATAACGTACTTGCTAAATGTTACGGTTCTACTAATGCTGCTAACGTAGTTAACGCAACTTTTAAAGGTTTGCGTGATATGACTTCTCCTGAGAAAGTCGCTGCGAAACGTGGTCTTTCAGTAGCACAAATTCAAGGGTAA 498 0.4558 MAKVEQNEGLVEKLVAVDRVAKVVKGGRIFSFTALTVVGDGNGRVGFGRGKAREVPAAISKALEAARRNMITVDLAGTTLQHPVNARHGASRVYMQPASEGTGVIAGGAMRAVLEAAGVHNVLAKCYGSTNAANVVNATFKGLRDMTSPEKVAAKRGLSVAQIQG 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo147g00214 165 SUPERFAMILY dsRNA-binding domain-like 7 75 - -
Pumo147g00214 165 FunFam 30S ribosomal protein S5 1 71 - -
Pumo147g00214 165 Pfam Ribosomal protein S5, N-terminal domain 11 73 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pumo147g00214 165 ProSitePatterns Ribosomal protein S5 signature. 27 59 IPR018192 -
Pumo147g00214 165 Gene3D - 2 72 - -
Pumo147g00214 165 Hamap 30S ribosomal protein S5 [rpsE]. 1 162 IPR005712 GO:0003735|GO:0006412|GO:0015935
Pumo147g00214 165 Gene3D - 73 165 IPR014721 -
Pumo147g00214 165 SUPERFAMILY Ribosomal protein S5 domain 2-like 79 157 IPR020568 -
Pumo147g00214 165 FunFam 30S ribosomal protein S5 74 165 - -
Pumo147g00214 165 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN S5 6 164 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pumo147g00214 165 Pfam Ribosomal protein S5, C-terminal domain 87 156 IPR005324 GO:0003735|GO:0005840|GO:0006412
Pumo147g00214 165 NCBIfam 30S ribosomal protein S5 10 161 IPR005712 GO:0003735|GO:0006412|GO:0015935
Pumo147g00214 165 ProSiteProfiles S5 double stranded RNA-binding domain profile. 10 73 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo147g00214 10 150 Cytoplasmic Ribosomal Protein Gene Family AT1G58983 32.680 3.42e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo147g00214 K02988 - acb:A1S_3064 293.508