Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo147g00207 ATGCCTATTCAAAAATGTAAGCCAACGTCACCAGGACGTCGCTTTGTAGAGAAAGTCGTTCACGACCATCTTCACAAAGGCGCACCTTATGCACCGTTGGTAGAAGCTAAAAAACGTACTGGTGGTCGTAATAATAACGGTCACATTACAACTCGTCACGTTGGTGGTGGTCATAAACAAAACTACCGTCTTATTGACTTTAAACGTAATAAAGATGGCATTCCAGCGACTGTAGAGCGTATTGAATACGATCCTAACCGTACTGCACACATTGCTTTGGTTTTGTATGCTGATGGTGAGCGTCGCTATATTATTGCGCCTAAAGGTTTGCGTGCTGGTGATAAAGTACAATCTGGTAACGATGCTCCAATTCGTCCAGGTAACTGCTTACCACTTCGTAACATGCCAATCGGTTCTACTCTTCACAACATCGAACTTAAAATCGGTAAAGGCGCGCAATTAGCTCGTTCAGCTGGTACATCTGTTCAGTTGTTGGGTCGTGACGGTTCTTACGCAATTGTTCGTTTACGTTCTGGCGAAATGCGTAAAATTCACGTTGAATGCCGTGCTGTGCTTGGTGAAGTTTCTAACCAAGAAAGCAACCTTCGTTCACTCGGTAAAGCGGGTGCTTCACGCTGGCGTGGCGTTCGTCCTACCGTACGTGGTATGGCGATGAACCCAGTTGATCACCCACATGGTGGTGGTGAAGGGCGTAATAAAGGTGCTATGATGGAAGTTACTGCTAAATTACGCGGTGCCGCTATCTCGGCACAAAAAGCTCGTTTGGTTGCAGATCTAATCCGTGGCAAGTCTATTGCTCACGCTTTAAATATCCTAAGCTTCAGCAATAAAAAAGCTGCAGTTTTAGTGAAAAAAGCTTTGGAATCTGCAATTGCTAACGCTGAACACAATAACAGTTTAGATGTGGACGACCTTAAAGTTTCTACGATTTACGTTGATGAAGGTGTGAGCCTTAAACGTATTATGCCACGTGCTAAAGGCCGTGCAGATCGTATTACTAAGCGTACTTGTCACATCACCGTTAAGAAGGTTCATCCAATCGGTATCCGCCTAGGTGTTGTGAAACGTCATAACGCTAACTGGTATGCGAGTCCGAAACAATACGCTGAATATTTGCTTAAAGATCTTCAAGTTCGTGAGTTTTTAACTAAAAAACTTAAAAATGCGATGATCAGCAAAATTCTTATCGAACGTCCAACAGGCGCTGCTAAAATTACTATTAGCACTGCTCGTCCTGGTATCGTTATCGGTAAAAAAGGCGAAGACATTGAAAAATTACAACGTGAATTAACATCTATTATGGGTGTTCCTGCACAAGTAAGTATCAACGAAATCGATCGCCCAGATTTAGACGCTCGTTTAGTTGCTGAAGCAATTGCTTCTCAATTAGAAAAACGTGTGATGTTCCGTCGTGCTATGAAGCGTGCGGTACAAAATACAATGCGTGCTGGTGCTAAAGGTATCAAAGTTGAAGTTTCTGGTCGTTTAGGTGGTGCAGAGATTGCGCGTACTGAATGGTATCGTGAAGGTCGTGTACCTTTGCATACACTTCGTGCAGACATCGACTACTCAACTATGCGTGCTGAAACAACTTACGGTACGATTGGCGTTAAAGTTTGGATTTTCCGTGGTGAGATCTTAGGTGGCATGAAACAAGTCATGAACCCTGCTCCTGCTGAAGAACGTCCAGCTAAACGTGGTCGCGGTCGTGGTGAAGTGCAAAAAGGCCGTAACACTGGTTTAGCACATCGCGGTAGCACTGTATCTTTTGGTACTATTGCGCTTAAATCTATTGAACGTGGTCAAATGACTGCGCGTCAAATTGAAGCTGCGCGTCGTACAATCAGCCGTCGTGTAAAACGTGGTGACGGTGATGTAATGAAAACTAATGATCTACGTGAAAAATCGGTAGAAGAGTTGAAGGCTTTGCTTGATGAGCAACAGCTTAACCAATTCCGTCTTCGTATGGCTAAAGCAACAGGTCAATTGGGTAAATCGCATGAAGTTGCGCTTACTCGGGAACGGACAATGAGTGAACAAACAGTTCGCACGTTAACCGGTAAAGTCGTAAGCGACAAAATGGACAAGTCTATTGTTGTGCTTATTGAACGCCGCGTTCAACACCCGTTGTATGGCAAATCAATCCGCCGTTCAACTAAATTACACGCTCATGATGAGAACAATGTTGCTAAAACTGGCGATATCGTGACCATTAAAGAAAGCCGCCCAATTTCTAAAACTAAAGCTTGGGCTTTAGTGGAAGTTATTGAAGCTGCTGCTGAGTAA 2307 0.4387 MPIQKCKPTSPGRRFVEKVVHDHLHKGAPYAPLVEAKKRTGGRNNNGHITTRHVGGGHKQNYRLIDFKRNKDGIPATVERIEYDPNRTAHIALVLYADGERRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNIELKIGKGAQLARSAGTSVQLLGRDGSYAIVRLRSGEMRKIHVECRAVLGEVSNQESNLRSLGKAGASRWRGVRPTVRGMAMNPVDHPHGGGEGRNKGAMMEVTAKLRGAAISAQKARLVADLIRGKSIAHALNILSFSNKKAAVLVKKALESAIANAEHNNSLDVDDLKVSTIYVDEGVSLKRIMPRAKGRADRITKRTCHITVKKVHPIGIRLGVVKRHNANWYASPKQYAEYLLKDLQVREFLTKKLKNAMISKILIERPTGAAKITISTARPGIVIGKKGEDIEKLQRELTSIMGVPAQVSINEIDRPDLDARLVAEAIASQLEKRVMFRRAMKRAVQNTMRAGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRADIDYSTMRAETTYGTIGVKVWIFRGEILGGMKQVMNPAPAEERPAKRGRGRGEVQKGRNTGLAHRGSTVSFGTIALKSIERGQMTARQIEAARRTISRRVKRGDGDVMKTNDLREKSVEELKALLDEQQLNQFRLRMAKATGQLGKSHEVALTRERTMSEQTVRTLTGKVVSDKMDKSIVVLIERRVQHPLYGKSIRRSTKLHAHDENNVAKTGDIVTIKESRPISKTKAWALVEVIEAAAE 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo147g00207 768 Gene3D - 363 453 IPR015946 -
Pumo147g00207 768 SUPERFAMILY Ribosomal protein S3 C-terminal domain 454 552 IPR036419 -
Pumo147g00207 768 Pfam Ribosomal Proteins L2, C-terminal domain 126 244 IPR022669 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 Hamap 50S ribosomal protein L29 [rpmC]. 634 690 IPR001854 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 SMART Ribosomal_L2_2 42 118 IPR002171 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 Gene3D - 118 196 IPR014722 -
Pumo147g00207 768 Pfam Ribosomal Proteins L2, RNA binding domain 42 117 IPR022666 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 Pfam Ribosomal protein S3, C-terminal domain 466 548 IPR001351 GO:0003735|GO:0006412
Pumo147g00207 768 Pfam Ribosomal protein S17 694 761 IPR000266 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 NCBIfam 30S ribosomal protein S3 349 555 IPR005704 GO:0003735|GO:0006412
Pumo147g00207 768 NCBIfam 30S ribosomal protein S17 690 760 IPR019984 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 SUPERFAMILY Nucleic acid-binding proteins 3 124 IPR012340 -
Pumo147g00207 768 Gene3D Ribosomal protein L22/L17 280 350 IPR036394 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 Pfam KH domain 385 456 IPR004044 GO:0003723
Pumo147g00207 768 SUPERFAMILY Nucleic acid-binding proteins 690 766 IPR012340 -
Pumo147g00207 768 SUPERFAMILY Ribosomal protein L16p/L10e 579 629 IPR036920 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 FunFam 50S ribosomal protein L2 1 114 - -
Pumo147g00207 768 Pfam Ribosomal L29 protein 637 680 IPR001854 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 Gene3D - 454 553 IPR036419 -
Pumo147g00207 768 Pfam Ribosomal protein L16p/L10e 582 635 IPR016180 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 ProSiteProfiles Type-2 KH domain profile. 385 453 IPR004044 GO:0003723
Pumo147g00207 768 Gene3D Ribosomal protein L2, domain 3 197 267 IPR014726 -
Pumo147g00207 768 PANTHER RIBOSOMAL PROTEIN L2 31 242 IPR002171 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 Gene3D - 639 683 IPR036049 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 Gene3D - 688 768 IPR012340 -
Pumo147g00207 768 Hamap 50S ribosomal protein L22 [rplV]. 244 353 IPR005727 GO:0003735|GO:0006412|GO:0015934
Pumo147g00207 768 SUPERFAMILY Ribosomal protein L29 (L29p) 633 681 IPR036049 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 FunFam 30S ribosomal protein S3 455 574 - -
Pumo147g00207 768 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 349 452 IPR009019 GO:0003723
Pumo147g00207 768 FunFam 50S ribosomal protein L2 118 195 - -
Pumo147g00207 768 Pfam Ribosomal protein L22p/L17e 248 348 IPR001063 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 MobiDBLite consensus disorder prediction 564 590 - -
Pumo147g00207 768 Hamap 30S ribosomal protein S17 [rpsQ]. 689 764 IPR019984 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 Gene3D - 1 114 IPR012340 -
Pumo147g00207 768 Hamap 50S ribosomal protein L2 [rplB]. 1 272 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Pumo147g00207 768 CDD Ribosomal_L22 246 349 IPR001063 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 SMART Ribosomal_L2_C_2 124 250 IPR022669 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 NCBIfam 50S ribosomal protein L2 3 242 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Pumo147g00207 768 Hamap 30S ribosomal protein S3 [rpsC]. 347 552 IPR005704 GO:0003735|GO:0006412
Pumo147g00207 768 ProSitePatterns Ribosomal protein S17 signature. 740 752 IPR019979 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 CDD KH-II_30S_S3 350 455 - -
Pumo147g00207 768 CDD Ribosomal_L29_HIP 637 680 - -
Pumo147g00207 768 NCBIfam 50S ribosomal protein L29 638 680 IPR001854 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 CDD Ribosomal_L16_L10e 591 631 IPR016180 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 SUPERFAMILY Ribosomal protein L22 244 348 IPR036394 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 ProSitePatterns Ribosomal protein S3 signature. 509 543 IPR018280 -
Pumo147g00207 768 Gene3D Ribosomal protein L10e/L16 564 638 IPR036920 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 NCBIfam 50S ribosomal protein L22 248 348 IPR005727 GO:0003735|GO:0006412|GO:0015934
Pumo147g00207 768 FunFam 50S ribosomal protein L22 244 352 - -
Pumo147g00207 768 SMART kh_6 406 471 IPR004087 GO:0003676
Pumo147g00207 768 FunFam 30S ribosomal protein S3 363 453 - -
Pumo147g00207 768 PRINTS Ribosomal protein S17 family signature 740 750 IPR000266 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 PRINTS Ribosomal protein S17 family signature 750 757 IPR000266 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 PRINTS Ribosomal protein S17 family signature 708 731 IPR000266 GO:0003735|GO:0005840|GO:0006412
Pumo147g00207 768 SUPERFAMILY Translation proteins SH3-like domain 126 246 IPR008991 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo147g00207 62 264 Cytoplasmic Ribosomal Protein Gene Family AT2G18020 31.628 4.66e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo147g00207 K02886 - acb:A1S_3077 481.485