Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo147g00205 ATGTCTAACCAGAGAATTCGTATCCGTTTGAAGTCTTTTGATCATCGTCTGATTGATCAATCTGCTCAAGAGATCGTAGAAACAGCAAAACGTACAGGCGCGCAAGTGTGTGGTCCTATCCCGATGCCTACTCGCATCGAACGTTTTAACGTTCTTACATCACCCCATGTGAATAAAGATGCGCGTGACCAATATGAAATCCGCACATATAAACGTTTGATCGATATCGTTCAACCAACAGACAAAACTGTTGATGCATTGATGAAATTAGATCTTGCAGCTGGTGTTGATGTTCAGATCGCATTGGGTTAA 312 0.4199 MSNQRIRIRLKSFDHRLIDQSAQEIVETAKRTGAQVCGPIPMPTRIERFNVLTSPHVNKDARDQYEIRTYKRLIDIVQPTDKTVDALMKLDLAAGVDVQIALG 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo147g00205 103 PRINTS Ribosomal protein S10 family signature 61 75 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pumo147g00205 103 PRINTS Ribosomal protein S10 family signature 5 18 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pumo147g00205 103 PRINTS Ribosomal protein S10 family signature 40 55 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pumo147g00205 103 Hamap 30S ribosomal protein S10 [rpsJ]. 3 102 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pumo147g00205 103 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 3 101 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pumo147g00205 103 Gene3D Ribosomal protein S10 domain 1 103 IPR036838 -
Pumo147g00205 103 SUPERFAMILY Ribosomal protein S10 5 101 IPR036838 -
Pumo147g00205 103 SMART Ribosomal_S10_2 7 101 IPR027486 -
Pumo147g00205 103 ProSitePatterns Ribosomal protein S10 signature. 29 44 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pumo147g00205 103 FunFam 30S ribosomal protein S10 1 102 - -
Pumo147g00205 103 Pfam Ribosomal protein S10p/S20e 7 100 IPR027486 -
Pumo147g00205 103 NCBIfam 30S ribosomal protein S10 4 101 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo147g00205 4 103 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 26.733 1.17e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo147g00205 K02946 - acb:A1S_3081 204.527