Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo147g00189 ATGAGTTTAATTGTACCCGCTGAAAAAACAGATCCTGTACAAAGCGAAACTGATCGCGTCGAACGCATTCTTGTTGTAGATGATGATGTACGCTTACGTACATTATTACAGCGCTTTTTAGAAGATAAAGGTTTCGTGGTTAAAACTGCACACGATGCAACCCAAATGGACCGTTTATTACAGCGCGAACTTTTCTCTCTGATCGTACTCGACTTTATGCTTCCTGTTGAAGATGGTTTAAGCATTTGTCGTCGTTTACGCCAATCGAATATTGACACCCCAATTATTATGTTGACCGCGCGTGGCAGCGATTCTGACCGCATTGCAGGGCTAGAAGCGGGTGCGGATGACTATTTACCTAAACCGTTTAATCCAAATGAACTATTAGCACGTATTCGTGCTGTGTTGCGTCGTCAAGTACGTGAAGTACCTGGCGCACCTAGTCAACAAATGGAAGTAGTGAGCTTTGGTCCTTGGTCACTCGATTTATCTACCCGTACGCTAACCCGTGAAGGTCAAGTGGTAACCCTCACCACTGGTGAATTTGCAGTACTTAAAGCCTTAGTCCAACATCCTCGTGAACCATTAACTCGCGACAAATTAATGAACTTGGCGCGTGGTCGTGAATGGGGTGCAATGGAACGTTCTATTGATGTACAAGTATCTCGTTTACGCCGTTTAGTGGAAGAAAATCCTGCCCGTGCACGTTATATCCAAACCGTTTGGGGCGTTGGTTATGTTTTCGTTCCAGATGGCGCAGAATAA 765 0.4484 MSLIVPAEKTDPVQSETDRVERILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLSICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVREVPGAPSQQMEVVSFGPWSLDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTRDKLMNLARGREWGAMERSIDVQVSRLRRLVEENPARARYIQTVWGVGYVFVPDGAE 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo147g00189 254 Pfam Response regulator receiver domain 23 133 IPR001789 GO:0000160
Pumo147g00189 254 SUPERFAMILY C-terminal effector domain of the bipartite response regulators 150 250 IPR016032 GO:0003677|GO:0006355
Pumo147g00189 254 FunFam DNA-binding response regulator PhoB 20 100 - -
Pumo147g00189 254 FunFam Two-component system response regulator TorR 141 251 - -
Pumo147g00189 254 ProSiteProfiles Response regulatory domain profile. 22 136 IPR001789 GO:0000160
Pumo147g00189 254 Pfam Transcriptional regulatory protein, C terminal 172 248 IPR001867 GO:0000160|GO:0003677|GO:0006355
Pumo147g00189 254 Gene3D - 146 254 IPR036388 -
Pumo147g00189 254 PANTHER REGULATOR OF RPOS 22 248 IPR039420 -
Pumo147g00189 254 Gene3D - 19 100 - -
Pumo147g00189 254 CDD REC_OmpR 24 122 - -
Pumo147g00189 254 Gene3D - 101 138 - -
Pumo147g00189 254 SUPERFAMILY CheY-like 22 143 IPR011006 -
Pumo147g00189 254 SMART Trans_reg_C_3 172 248 IPR001867 GO:0000160|GO:0003677|GO:0006355
Pumo147g00189 254 ProSiteProfiles OmpR/PhoB-type DNA-binding domain profile. 151 250 IPR001867 GO:0000160|GO:0003677|GO:0006355
Pumo147g00189 254 SMART REC_2 21 132 IPR001789 GO:0000160
Pumo147g00189 254 CDD trans_reg_C 159 248 IPR001867 GO:0000160|GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo147g00189 22 137 Response Regulator Gene Family AT4G31920 33.051 3.57e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo147g00189 Response_reg 1.8e-29 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo147g00189 K07659 - acb:A1S_3229 479.944