Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo147g00181 ATGGCTAAGGCTAAGTTTGAACGTAATAAGCCACACGTAAACGTGGGTACAATTGGTCACGTTGACCATGGTAAAACAACTTTAACTGCTGCAATTGCAACAATTTGTGCAAAAACTTACGGCGGTGAAGCTAAAGATTACGCAGCAATTGACTCTGCACCAGAAGAAAAAGCGCGTGGTATTACCATTAATACTTCACACGTAGAATACGATTCTCCAGTTCGTCACTACGCTCACGTAGACTGCCCAGGGCATGCCGATTATGTTAAAAACATGATCACTGGTGCTGCTCAAATGGACGGCGCGATTCTTGTATGTGCTGCGACTGATGGTCCTATGCCACAGACTCGTGAACACATCCTTCTTTCTCGTCAGGTTGGTGTACCTTATATTCTTGTATTCCTTAACAAGTGTGACCTTGTTGATGATGAAGAATTACTTGAATTGGTAGAAATGGAAGTTCGTGAACTTCTTTCTACTTATGACTTCCCAGGTGATGACACTCCAATCATCCGTGGTTCAGCGCTTCAAGCGTTGAATGGTAACGATGGTCCATATGGCGAAAAAGCTGTAATCGACTTAGTTGCTGCACTTGATTCTTATATTCCAGAACCAGAACGTGCGATTGATAAAGCATTCTTAATGCCAATCGAAGATGTATTCTCTATCTCTGGTCGCGGTACTGTTGTAACAGGTCGTGTAGAGTCAGGTATCGTTAAAGTTGGCGAAGAAGTTGAAATCGTTGGTATTAAAGATACAGTTAAAACAACTGTAACTGGCGTAGAAATGTTCCGTAAATTGCTTGACGAAGGTCGTGCAGGCGAGAACTGTGGTGTTCTTCTACGTGGTACTAAACGTGAAGACGTTCAACGTGGTCAAGTATTGACTAAACCAGGTGCAATCAAACCGCACACTAAATTCGATGCAGAAGTATACGTACTTTCTAAAGAAGAAGGTGGTCGTCATACTCCATTCCTTAACGGTTACCGTCCACAGTTCTACTTCCGTACAACTGACGTAACTGGCGCTATTCAGTTGAAAGAAGGCGTTGAAATGGTTATGCCTGGTGACAACGTAGAAATGTCAGTAGAGCTTATTCACCCAATCGCAATGGACCCAGGTCTACGTTTTGCGATTCGTGAAGGTGGTCGTACTGTAGGCGCTGGTGTTGTTGCGAAATATTTGCCAGCATATTGGGCACCTGCCAATAATATTGGGGTGCGCGTTGGTGTGATTTTGGCTTGTATCATTGTGGCTTTAGGTTTATTATACGCCACCCATCAAGGCAAAGGCTTTGTTCGTTTATTGAAAGATTCGCGAATAGAGTTGCGTCGTGTGACTTGGCCAACTAAGCAAGAAACTGTGACCACATCTTGGCATGTTCTTGCGGTGGTTGTAATCGCTTCCATTGTTTTATGGTGTTATGAAAAACAGGTGTTACGCTCGCTTAATGATCGAATCCAGCGTAGCGCTGTAGCCGATAGCTTTGGTGAAGTCCTTGTTCCTACCGAAGAAGTGGTAGAGATGAAGGATGGTAAGAAGCGTAAATCAGAGCGTAAATTCTTTCCAGGCTATGTATTGGTCGAAATGGAAATGAATGACGATACTTGGCATATCGTAAAAGAATGTCCAAAAGTACTTGGTTTTATTGGTGGTACGGCGGAAAAACCTGCACCAATTACGCAAAAAGAAGCTGATGCGATTCTTGCACGTGTACGCAATACTGGTGAAGCGCCTCGTCCTAAGACGATGTTTGAACCAGGTGAAGAATTACTTGTTATTGATGGTCCATTCACCGACTTTAAAGGCGTGGTGGAAGAAGTTCAATACGAGAAGTCACGTTTAACGTTGACGATTAATGTATTTAATCGACCAACTCAGGTTGAGCTCGAATTTCGCCAAGTCGAAAAAGCGAACTAA 1920 0.4333 MAKAKFERNKPHVNVGTIGHVDHGKTTLTAAIATICAKTYGGEAKDYAAIDSAPEEKARGITINTSHVEYDSPVRHYAHVDCPGHADYVKNMITGAAQMDGAILVCAATDGPMPQTREHILLSRQVGVPYILVFLNKCDLVDDEELLELVEMEVRELLSTYDFPGDDTPIIRGSALQALNGNDGPYGEKAVIDLVAALDSYIPEPERAIDKAFLMPIEDVFSISGRGTVVTGRVESGIVKVGEEVEIVGIKDTVKTTVTGVEMFRKLLDEGRAGENCGVLLRGTKREDVQRGQVLTKPGAIKPHTKFDAEVYVLSKEEGGRHTPFLNGYRPQFYFRTTDVTGAIQLKEGVEMVMPGDNVEMSVELIHPIAMDPGLRFAIREGGRTVGAGVVAKYLPAYWAPANNIGVRVGVILACIIVALGLLYATHQGKGFVRLLKDSRIELRRVTWPTKQETVTTSWHVLAVVVIASIVLWCYEKQVLRSLNDRIQRSAVADSFGEVLVPTEEVVEMKDGKKRKSERKFFPGYVLVEMEMNDDTWHIVKECPKVLGFIGGTAEKPAPITQKEADAILARVRNTGEAPRPKTMFEPGEELLVIDGPFTDFKGVVEEVQYEKSRLTLTINVFNRPTQVELEFRQVEKAN 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo147g00181 639 ProSitePatterns Protein secE/sec61-gamma signature. 435 463 IPR001901 GO:0006605|GO:0006886|GO:0016020
Pumo147g00181 639 FunFam Elongation factor Tu 1 205 - -
Pumo147g00181 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 221 IPR027417 -
Pumo147g00181 639 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 304 396 IPR009001 -
Pumo147g00181 639 NCBIfam preprotein translocase subunit SecE 433 481 IPR005807 GO:0008320|GO:0009306|GO:0016020
Pumo147g00181 639 FunFam Transcription termination/antitermination protein NusG 456 574 - -
Pumo147g00181 639 CDD EF_Tu 11 205 IPR041709 -
Pumo147g00181 639 SUPERFAMILY Translation proteins 207 303 IPR009000 -
Pumo147g00181 639 Hamap Protein translocase subunit SecE [secE]. 430 487 IPR001901 GO:0006605|GO:0006886|GO:0016020
Pumo147g00181 639 NCBIfam small GTP-binding protein domain 13 147 IPR005225 GO:0005525
Pumo147g00181 639 Gene3D - 1 205 IPR027417 -
Pumo147g00181 639 Pfam Transcription termination factor nusG 475 569 IPR006645 GO:0140673
Pumo147g00181 639 Pfam Elongation factor Tu domain 2 227 296 IPR004161 GO:0005525
Pumo147g00181 639 CDD KOW_NusG 582 637 - -
Pumo147g00181 639 Gene3D Translation factors 208 336 - -
Pumo147g00181 639 SMART kow_9 584 611 IPR005824 -
Pumo147g00181 639 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 10 206 IPR000795 GO:0003924|GO:0005525
Pumo147g00181 639 PRINTS GTP-binding elongation factor signature 14 27 IPR000795 GO:0003924|GO:0005525
Pumo147g00181 639 PRINTS GTP-binding elongation factor signature 131 140 IPR000795 GO:0003924|GO:0005525
Pumo147g00181 639 PRINTS GTP-binding elongation factor signature 58 66 IPR000795 GO:0003924|GO:0005525
Pumo147g00181 639 PRINTS GTP-binding elongation factor signature 78 88 IPR000795 GO:0003924|GO:0005525
Pumo147g00181 639 PRINTS GTP-binding elongation factor signature 94 105 IPR000795 GO:0003924|GO:0005525
Pumo147g00181 639 Gene3D Translation factors 340 395 - -
Pumo147g00181 639 NCBIfam elongation factor Tu 1 394 IPR004541 GO:0003746|GO:0005525|GO:0006414
Pumo147g00181 639 Gene3D - 580 638 IPR014722 -
Pumo147g00181 639 SUPERFAMILY N-utilization substance G protein NusG, N-terminal domain 473 574 IPR036735 GO:0006355
Pumo147g00181 639 Pfam SecE/Sec61-gamma subunits of protein translocation complex 435 474 IPR001901 GO:0006605|GO:0006886|GO:0016020
Pumo147g00181 639 Hamap Transcription termination/antitermination protein NusG [nusG]. 456 638 IPR001062 GO:0032784
Pumo147g00181 639 CDD EFTU_III 302 391 - -
Pumo147g00181 639 Hamap Elongation factor Tu [tuf]. 1 396 IPR004541 GO:0003746|GO:0005525|GO:0006414
Pumo147g00181 639 CDD NGN_Bact_1 475 572 IPR047050 -
Pumo147g00181 639 Gene3D - 470 574 IPR036735 GO:0006355
Pumo147g00181 639 PANTHER ELONGATION FACTOR TU-RELATED 3 396 - -
Pumo147g00181 639 NCBIfam transcription termination/antitermination protein NusG 475 637 IPR001062 GO:0032784
Pumo147g00181 639 SMART nusgn_4 456 572 IPR006645 GO:0140673
Pumo147g00181 639 Pfam Elongation factor Tu C-terminal domain 301 393 IPR004160 -
Pumo147g00181 639 FunFam Elongation factor Tu 208 336 - -
Pumo147g00181 639 CDD EFTU_II 213 299 IPR033720 -
Pumo147g00181 639 Pfam Elongation factor Tu GTP binding domain 10 203 IPR000795 GO:0003924|GO:0005525
Pumo147g00181 639 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 IPR031157 -
Pumo147g00181 639 SUPERFAMILY Translation proteins SH3-like domain 582 637 IPR008991 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo147g00181 1 391 Eukaryotic Initiation Factors Gene Family AT5G60390 29.025 4.71e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo147g00181 K02358 - acb:A1S_0279 714.916