Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo147g00175 ATGAATAGCGGTCGTATCATTCAGATCATCGGCGCGGTTATCGACGTCGAGTTTGAACGTAATAGCGTTCCTAAGATCTATGACGCTCTACAAGTTGTTGGTACTGAAACTACTTTAGAAGTTCAGCAACAGCTTGGTGATGGCGTAGTTCGTACAATCGCAATGGGATCTACTGAAGGTCTTAAACGTGGTTTAACAGTTACAAATACAGAAGCGCCTATTTCTGTGCCAGTGGGTACAGCATGTTTGGGTCGTATCATGGATGTTTTAGGACGTCCTATCGATGAAGCTGGCCCTGTTGCAACTGAAGCGCGTTTACCGATTCACCGTCAACCGCCTACATATGCAGAACAAGCAGCGTCTACCGATCTTTTAGAAACTGGTATTAAAGTCATTGACTTACTTTGCCCGTTTGCTAAAGGTGGTAAAGTTGGTTTGTTCGGTGGTGCCGGTGTTGGTAAAACTGTAAACATGATGGAATTGATCAACAACATCGCGAAAGCTCACTCAGGTTTATCTGTGTTTGCTGGTGTTGGTGAACGTACTCGTGAAGGTAATGACTTCTATCACGAAATGAAAGATTCTAACGTTCTAGACAAAGTAGCAATGGTCTACGGTCAGATGAATGAGCCACCGGGTAACCGTTTACGCGTAGCGTTGACTGGTTTGACTATGGCTGAATATTTCCGTGATGAGAAAGACGAAAACGGTAAAGGTCGTGACGTATTGTTGTTCGTTGACAACATTTACCGTTACACATTGGCTGGTACTGAAGTGTCTGCACTTTTAGGTCGTATGCCATCTGCAGTAGGTTATCAGCCTACACTTGCAGAGGAAATGGGTCTTCTTCAAGAGCGTATTACATCAACTAAATCTGGTTCGATCACATCGATCCAAGCAGTTTATGTACCTGCCGATGACTTAACAGATCCATCGCCTGCTACAACGTTTGCTCACTTAGACGCAACTGTTGTATTGAGCCGTGACATCGCATCTTCTGGTATTTATCCAGCGATCGATCCACTTGACTCAACTTCACGCCAGTTAGACCCATTAGTGGTTGGTGCTGAGCATTATGAAATTGCACGTTCTGTACAGAATGTTTTGCAACGTTATAAAGAGCTTAAAGACATCATCGCAATTTTGGGTATGGACGAATTGGCTGAAGAAGATAAATTGGTTGTTTACCGTGCGCGTAAAATCCAACGTTTCTTCTCTCAACCGTTCCACGTAGCTGAAGTATTTACTGGCGCTCCTGGTAAATTAGTATCTCTTAAAGAAACGATTCGTGGCTTTAAAGGTCTTTTAGCTGGTGAATACGATCACATTCCAGAACAAGCGTTCTATATGGTTGGTGGTATTGACGAAGTAATTGCTAAAGCTGAGAAACTCTAA 1395 0.433 MNSGRIIQIIGAVIDVEFERNSVPKIYDALQVVGTETTLEVQQQLGDGVVRTIAMGSTEGLKRGLTVTNTEAPISVPVGTACLGRIMDVLGRPIDEAGPVATEARLPIHRQPPTYAEQAASTDLLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDENGKGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGLLQERITSTKSGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASSGIYPAIDPLDSTSRQLDPLVVGAEHYEIARSVQNVLQRYKELKDIIAILGMDELAEEDKLVVYRARKIQRFFSQPFHVAEVFTGAPGKLVSLKETIRGFKGLLAGEYDHIPEQAFYMVGGIDEVIAKAEKL 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo147g00175 464 PANTHER ATP SYNTHASE 3 464 - -
Pumo147g00175 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 352 IPR027417 -
Pumo147g00175 464 Gene3D - 349 464 IPR024034 -
Pumo147g00175 464 FunFam ATP synthase subunit beta 349 464 - -
Pumo147g00175 464 ProSitePatterns ATP synthase alpha and beta subunits signature. 337 346 IPR020003 GO:0005524
Pumo147g00175 464 FunFam ATP synthase subunit beta 74 348 - -
Pumo147g00175 464 CDD F1-ATPase_beta_CD 75 351 - -
Pumo147g00175 464 CDD ATP-synt_F1_beta_N 2 74 - -
Pumo147g00175 464 Hamap ATP synthase subunit beta [atpB]. 1 464 IPR005722 GO:0015986|GO:0045261|GO:0046933
Pumo147g00175 464 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 128 346 IPR000194 GO:0005524
Pumo147g00175 464 CDD ATP-synt_F1_beta_C 353 460 - -
Pumo147g00175 464 Pfam ATP synthase alpha/beta family, beta-barrel domain 6 70 IPR004100 GO:0046034|GO:1902600
Pumo147g00175 464 SMART AAA_5 140 331 IPR003593 GO:0016887
Pumo147g00175 464 Gene3D - 1 73 - -
Pumo147g00175 464 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 349 463 - -
Pumo147g00175 464 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 1 73 IPR036121 GO:0046034|GO:1902600
Pumo147g00175 464 NCBIfam F0F1 ATP synthase subunit beta 3 464 IPR005722 GO:0015986|GO:0045261|GO:0046933
Pumo147g00175 464 Gene3D - 74 347 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo147g00175 66 405 Primary Pumps ATPases(2) AT1G20260 26.519 3.00e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo147g00175 K02112 - acb:A1S_0155 858.211