Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo147g00168 ATGGTCGGCTTAATTGATCGAGCGCAATCCTCGTTGGTGGCTTTAGCTGAAGCAGTGGTTTTAATTGATGAATCACACCAAATTGAATGGTGGAATCCCGCAGCGGAAAAACTACTGGGTATTCAACCTTTAGACCGTGGTCGTAATATTTTAACCATTCTGCGTCAACCCAATTTTATCGAATATTTCAACCATATTGACCAAGCACCAGATGGCTTAAAATTAAAATCTTCAGCATTTGAAGACCATTATGTGCAAGTGAAAATGACCCGTTTTGGTGGGGAAAGTCGCTTATTGGTTGCCTATGATGTCACCCGCATGCACAACTTAGAACAAATGCGCAAAGACTTTGTCGATAATATTTCCCACGAATTGCGTACCCCATTAACGGTACTCAGTGGCTATATTGAAACCTTTACCGACCAAGAAGATTTAAACCCGCGCTGGAAACGTGCCTTTGACCAAATGCAGGCTCAAGCCAAACGTATGAATGCGTTGGTAAATGACTTACTACTTCTGTCACGTTTAGAAAGTAACAAACAAATTGCCAAAAATCAGATTATTGAAATGCCAAGTCTGATGAACCAACTCTTTGATGATGCTCAAGCCTATAACGTTGACTATAACCACACATTAAACTTAGATATTGATAGTCATTGTGACCTGATTGGTTCAGATATAGAACTTGCCAGTGCTTTTAGCAACCTGATTACCAATGCCATCAAATACACACCTAAAGGTGGCACAGTGACCATCGGTTGGCATGACGATGGTAGTCATGGCATCTTTACTGTTCAAGATACAGGTATTGGCATTGACCCCAAACATTTACCGCGTTTAACCGAGCGTTTTTATCGTGTAGATAGCGCACGTAGTCGTCAAACAGGCGGTACGGGTCTCGGTTTGGCTATTGTGAAACATGTCTTAATGCAACATGACGCTTATTTAGAAATAGAATCCAAAGAAAATCAAGGCTCTATCTTTAAAGTCATTTTTCCAAAAGAACGCCTTTATCATATGACCGATTAA 1029 0.4062 MVGLIDRAQSSLVALAEAVVLIDESHQIEWWNPAAEKLLGIQPLDRGRNILTILRQPNFIEYFNHIDQAPDGLKLKSSAFEDHYVQVKMTRFGGESRLLVAYDVTRMHNLEQMRKDFVDNISHELRTPLTVLSGYIETFTDQEDLNPRWKRAFDQMQAQAKRMNALVNDLLLLSRLESNKQIAKNQIIEMPSLMNQLFDDAQAYNVDYNHTLNLDIDSHCDLIGSDIELASAFSNLITNAIKYTPKGGTVTIGWHDDGSHGIFTVQDTGIGIDPKHLPRLTERFYRVDSARSRQTGGTGLGLAIVKHVLMQHDAYLEIESKENQGSIFKVIFPKERLYHMTD 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo147g00168 342 Gene3D - 181 339 IPR036890 -
Pumo147g00168 342 ProSiteProfiles Histidine kinase domain profile. 120 336 IPR005467 -
Pumo147g00168 342 FunFam Two-component sensor histidine kinase 109 180 - -
Pumo147g00168 342 CDD HisKA 111 175 IPR003661 GO:0000155|GO:0007165
Pumo147g00168 342 PRINTS Bacterial sensor protein C-terminal signature 279 289 IPR004358 GO:0016310|GO:0016772
Pumo147g00168 342 PRINTS Bacterial sensor protein C-terminal signature 296 314 IPR004358 GO:0016310|GO:0016772
Pumo147g00168 342 PRINTS Bacterial sensor protein C-terminal signature 261 275 IPR004358 GO:0016310|GO:0016772
Pumo147g00168 342 PRINTS Bacterial sensor protein C-terminal signature 320 333 IPR004358 GO:0016310|GO:0016772
Pumo147g00168 342 PANTHER PHOSPHATE REGULON SENSOR PROTEIN PHOR 14 336 - -
Pumo147g00168 342 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 227 335 IPR003594 -
Pumo147g00168 342 NCBIfam phosphate regulon sensor histidine kinase PhoR 5 332 IPR014310 GO:0000155|GO:0000160|GO:0004673|GO:0016020
Pumo147g00168 342 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 102 180 IPR036097 GO:0000155|GO:0007165
Pumo147g00168 342 CDD PAS 15 118 IPR000014 -
Pumo147g00168 342 Gene3D PAS domain 9 105 - -
Pumo147g00168 342 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 168 334 IPR036890 -
Pumo147g00168 342 ProSiteProfiles PAS repeat profile. 1 45 IPR000014 -
Pumo147g00168 342 Pfam His Kinase A (phospho-acceptor) domain 113 178 IPR003661 GO:0000155|GO:0007165
Pumo147g00168 342 SMART HisKA_10 113 179 IPR003661 GO:0000155|GO:0007165
Pumo147g00168 342 FunFam Phosphate regulon sensor histidine kinase PhoR 185 338 - -
Pumo147g00168 342 Gene3D - 106 180 - -
Pumo147g00168 342 SMART HKATPase_4 224 336 IPR003594 -
Pumo147g00168 342 SUPERFAMILY PYP-like sensor domain (PAS domain) 14 58 IPR035965 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo147g00168 114 330 Histidine Kinase Gene Family AT2G17820 25.869 3.25e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo147g00168 K07636 - acb:A1S_3376 614.764