Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo147g00144 ATGTGTCAGTGGTATGTCGAACGTGCTGAAAATGCCACTTTATGGGACAAAGAAGGCAATGAATATATCGACTTTGCAGGCGGGATTGCCGTTTTAAATACAGGGCATCGTCATCCTAAAATTATTGCGGCTGTGACTGAACAATTAGGAAAATTTACCCATACGGCATATCAAATCGTGCCTTACGAAAGTTATATCTCATTGGTTGAAAAAATTGTAGAACGCGCACCTATTGCGGGCGCAGCAAAAGCTGCACTCTTTACCACGGGCGCAGAAGCAGTGGAAAATGCCATTAAAATTGCCCGTGCAGCAACCAAACGTCACGGTGTGATTACTTTTAGTGGTGCATTCCACGGACGTACTTTTATGACCATGGCAATGACAGGAAAAACTGCGCCATATAAACGCGATTTTGGAGTCATGCCCGCAGGTGTTTTTCATGCGCGCTATCCTATTGCCGCAAATGGCATTACGGTTGATGACGCCATTGAAAGCCTAGAAGAAATTTTTAGTACCGATATTGCTGCCCATGATGTTGCAGCTATTGTGCTTGAGCCAGTTCAAGGCGAAGGTGGCTTCCATGTCGCTCCACAAGAGTTCATGATTCGTCTACGTCAAATCTGTGATCAACATGGCATTTTACTGGTTGCCGATGAAGTACAAACAGGCTTTGCCCGTACAGGTCAATTATTTGCGATGCACCATCATCCAGAAGTACATGCCGACTTAATCACTATGGCTAAAAGCTTAGGTGGCGGTTTCCCTATTTCTGGCGTCGTGGGTCGTGCAGACATTATGGATGCACCAAATCCAGGTGGTTTAGGGGGTACATATGCAGGAAATCCACTAGCAGTTGCAGCGGCGCATGCGGTCATTGACATTATAGAAGAAGAAAAACTTTGTGAGCGCGCCAATAAATTGGGCGCACAATTAATTGATGTCCTTGAAGATTTAAAAGAAATTCATCCTTTTGTCCGTGATATTCGTGGTCTAGGCTCAATGGTTGCAATTGAATTAGATACCGCAGAACAAGTGAAAGCCATCCAAGAATATGCAATGAACAATCACCTCATCTTATTATCATGTGATCCCGCTTCACAAAACTATATTGAAGTGAAGGACGCAGCGACTGGCGAACCGTTGGCTTGGGTGAAAAAACATGATCGCCGCGCTGTAGAAGCCGCTATTTTACGTTCAGAGCAAGCACAAGCGACTTTTAAAAAGCAAACCGCGCAACAACGTGCAGATATACTCATGGCTTGGTATCAACTCATGTTGAAACACCAAGAAGATTTGGCACAGATTCTTACAGCGGAACAAGGCAAACCTTTAACAGAGGCACGAGGCGAAATCGGCTATGCGGCGTCATTTATCCGTTGGTTTGCAGAACAAGCCCGTCGAATAGATGGCGACATTTTACAATCAGCCCAATCACAACAACGCTTGCTGGTCATTAAACAGGCAATAGGCGTTACTGCGGCAATTACGCCGTGGAACTTTCCTGCAGCCATGATTACGCGGAAAATCGCGCCTGCACTTGCCGCAGGATGTTCAATGCTGGTCAAACCTGCAGAACAAACCCCTTTAAGTGCATACGCTTTAGAAGTTCTTGCGCTGCAAGCAGGTTTAGCCCCAGATGTGATGATTACACTCAGTGGCGATTCAGCAGAGGTTGGCAAAACGCTATGTGAAAGCGATATTGTCCGCAAACTCAGTTTTACAGGCTCGACAGAGGTTGGGCGCATCTTAATGCAACAATGTGCGCCAACCATTAAAAAACTGTCATTAGAATTGGGTGGAAATGCCCCCGTTATTGTTTTTGACGATGCCAACATCGAACAAGCAGTAAAAGGCATTATGGTCAGCAAATTCCGTAACAGCGGTCAAACGTGCGTCTGTGCCAACCGCATCTATATTCAAGAAGGAATATACGATGCAGTAAGCAAACGCGTCATAGAAGAAGTCAAAAAACTTAAAGTGGGAGATGGGCGCGTAGAAGGCACAACCCAAGGACCTTTAATTGACGAAGACGCGATTACTAAAGTTGAAACACATATTCAAGATGCAATTCACAAAGGTGCTCAGCTCGCAACAGGCGGTAAACGCCTAAGCAAAGACAATACATTCTTTGAACCAACCGTTCTTACGGGAGTCACCAAAGATATGCGCATTGCACGCGAAGAAACCTTTGGACCATTAGCACCGCTCTTTCCTTTTAAAACGGAAGAAGATGCTGTGAAAATGGCAAACGACACCGAATTTGGCTTGGCTGCCTATATCTTTACCCAAAGCACTGCACGACAATGGCGCGTTGGCGAAGCATTAGAATATGGCATGGTTGGGTTGAATACAGGACTAATTTCAAATGAAGTTGCACCTTTTGGCGGTGTGAAACAATCAGGTTTAGGACGAGAAGGTTCAAAATATGGCATTGATGATTATCTGGTGATGAAATACCTCTGCTTAGATTTGTCCGAGTAA 2481 0.4502 MCQWYVERAENATLWDKEGNEYIDFAGGIAVLNTGHRHPKIIAAVTEQLGKFTHTAYQIVPYESYISLVEKIVERAPIAGAAKAALFTTGAEAVENAIKIARAATKRHGVITFSGAFHGRTFMTMAMTGKTAPYKRDFGVMPAGVFHARYPIAANGITVDDAIESLEEIFSTDIAAHDVAAIVLEPVQGEGGFHVAPQEFMIRLRQICDQHGILLVADEVQTGFARTGQLFAMHHHPEVHADLITMAKSLGGGFPISGVVGRADIMDAPNPGGLGGTYAGNPLAVAAAHAVIDIIEEEKLCERANKLGAQLIDVLEDLKEIHPFVRDIRGLGSMVAIELDTAEQVKAIQEYAMNNHLILLSCDPASQNYIEVKDAATGEPLAWVKKHDRRAVEAAILRSEQAQATFKKQTAQQRADILMAWYQLMLKHQEDLAQILTAEQGKPLTEARGEIGYAASFIRWFAEQARRIDGDILQSAQSQQRLLVIKQAIGVTAAITPWNFPAAMITRKIAPALAAGCSMLVKPAEQTPLSAYALEVLALQAGLAPDVMITLSGDSAEVGKTLCESDIVRKLSFTGSTEVGRILMQQCAPTIKKLSLELGGNAPVIVFDDANIEQAVKGIMVSKFRNSGQTCVCANRIYIQEGIYDAVSKRVIEEVKKLKVGDGRVEGTTQGPLIDEDAITKVETHIQDAIHKGAQLATGGKRLSKDNTFFEPTVLTGVTKDMRIAREETFGPLAPLFPFKTEEDAVKMANDTEFGLAAYIFTQSTARQWRVGEALEYGMVGLNTGLISNEVAPFGGVKQSGLGREGSKYGIDDYLVMKYLCLDLSE 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo147g00144 826 FunFam Succinate-semialdehyde dehydrogenase I 600 789 - -
Pumo147g00144 826 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 600 789 IPR016163 GO:0016620
Pumo147g00144 826 Gene3D Aspartate Aminotransferase, domain 1 3 365 IPR015422 GO:0003824
Pumo147g00144 826 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 363 822 - -
Pumo147g00144 826 CDD ALDH_F5_SSADH_GabD 372 822 - -
Pumo147g00144 826 CDD OAT_like 5 362 IPR005814 GO:0008483|GO:0030170
Pumo147g00144 826 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 624 635 IPR016160 GO:0016491
Pumo147g00144 826 FunFam Succinate-semialdehyde dehydrogenase I 367 614 - -
Pumo147g00144 826 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 371 814 IPR016162 GO:0016491
Pumo147g00144 826 FunFam 4-aminobutyrate aminotransferase 38 298 - -
Pumo147g00144 826 Pfam Aldehyde dehydrogenase family 366 818 IPR015590 GO:0016491
Pumo147g00144 826 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 215 253 IPR005814 GO:0008483|GO:0030170
Pumo147g00144 826 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 596 603 IPR029510 GO:0016491
Pumo147g00144 826 Gene3D - 38 298 IPR015421 GO:0003824
Pumo147g00144 826 Pfam Aminotransferase class-III 5 364 IPR005814 GO:0008483|GO:0030170
Pumo147g00144 826 SUPERFAMILY PLP-dependent transferases 4 364 IPR015424 -
Pumo147g00144 826 NCBIfam succinate-semialdehyde dehydrogenase 372 818 IPR010102 GO:0009013|GO:0009450
Pumo147g00144 826 SUPERFAMILY ALDH-like 364 822 IPR016161 GO:0016491
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo147g00144 363 822 Aldehyde Dehydrogenase Gene Family AT1G79440 57.609 0.0 535