Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo147g00126 ATGTCAGATAGTCATATTCCTCTTCCTGAACGGCTCCGCCCACGTGATTTATCCGAAATTATAGGTCAAGATCATTTATTAGGGGCTCAAGCACCATTACGCCAAATGATCGATCAAGGGCATTTACCCTCGATTATTTTTTGGGGACCCCCTGGTGTGGGAAAAACTACCATTGCATTGTTGTTGGCACAAGCGGTAGATCGCCCTTTTGTCAGCCTATCTGCGCTGAATACAGGCGTCAAAGAACTGCGTGAAATCATTGCTGAAAGTGGAGATTTACTGACCCCCGTGGTCTTTATTGATGAAATTCATCGTTTCAATAAGTCGCAACAAGATGCTTTGTTAAATGCCGTGGAAAAAGGCAAAATTACGCTGATTGGAGCAACCACAGAAAACCCATCCTTTGAAGTGAATAATGCACTGCTTTCACGTTGTCAGGTCTATACCTTAAATGCGTTAAGTGATGATGCCATTCGGACGTTATTAAACAATGCACTACAACAAGATGATTTTTTAAAAGCGCGTTTTATTCACATAGAAGAAGATGAAGCTTTAATTCAGTTTGCGGCTGGAGATGCGCGTAAAGCACTTAATTTACTCGATGTCATTGCCAGTACTTTTGAGCCAGATATAGAAAATAATCTGACCAATGCTATTGTGGTGAAAGTCGCACAACAGAATATTGCCCGTTATGATAAATCGGGTGAACAGCATTATGATCTGGTTTCGGCTTTTATTAAGTCAATTCGAGGCAGTGATCCAGATGCAACTTTATACTGGATGGCGCGTATGCTCAAAGGTGGGGAAGATCCTGTCTTTATCGCCCGTCGTATGCTCATTGCCGCGTCAGAAGATATTGGCAATTCCAACCCAAATGCTTTGTTGTTGGCAGGAGAATGTTTCCGTTCGGTTCAAGCTGTCGGAATGCCTGAATGCCGTATTATTTTAGGGCAATGTGCCGTTTATTTGGCGACCAGTGCCAAAAGTAACAGTACGTATTTAGCCATCAATAAAGCTCTAGAGTTGGCAGAGAAGACTGCAAATTTACCTGTGCCGTTACATTTAAGAAATGCACCGACCAAGCTCATGAAAGAACAAGGTTATGGCGTACATTATCTGTATCCGCATAACTACCCAGAGCATTTTGTGTTGCAAGCATATTTGCCGCCCGAGTTAAAAGGCACAAAGTTATATGAGTCTGCGCGCAATAAGCGTGAAGTTGAAGGCGAACGCTTACAACAGCGCCGTTGGCAGCAAGAACAGCAACAGCAATAA 1275 0.4298 MSDSHIPLPERLRPRDLSEIIGQDHLLGAQAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAVDRPFVSLSALNTGVKELREIIAESGDLLTPVVFIDEIHRFNKSQQDALLNAVEKGKITLIGATTENPSFEVNNALLSRCQVYTLNALSDDAIRTLLNNALQQDDFLKARFIHIEEDEALIQFAAGDARKALNLLDVIASTFEPDIENNLTNAIVVKVAQQNIARYDKSGEQHYDLVSAFIKSIRGSDPDATLYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPECRIILGQCAVYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKEQGYGVHYLYPHNYPEHFVLQAYLPPELKGTKLYESARNKREVEGERLQQRRWQQEQQQQ 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo147g00126 424 FunFam Replication-associated recombination protein A 1 152 - -
Pumo147g00126 424 SMART AAA_5 41 153 IPR003593 GO:0016887
Pumo147g00126 424 Gene3D - 224 328 - -
Pumo147g00126 424 Gene3D - 329 424 - -
Pumo147g00126 424 Pfam MgsA AAA+ ATPase C terminal 251 410 IPR021886 -
Pumo147g00126 424 Gene3D - 153 223 - -
Pumo147g00126 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 219 IPR027417 -
Pumo147g00126 424 Pfam AAA C-terminal domain 177 250 IPR032423 -
Pumo147g00126 424 Pfam ATPase family associated with various cellular activities (AAA) 45 147 IPR003959 GO:0005524|GO:0016887
Pumo147g00126 424 FunFam Putative AAA family ATPase 225 328 - -
Pumo147g00126 424 Gene3D - 1 152 IPR027417 -
Pumo147g00126 424 CDD AAA 21 146 - -
Pumo147g00126 424 CDD HLD_clamp_RarA 153 225 - -
Pumo147g00126 424 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 3 406 - -
Pumo147g00126 424 SUPERFAMILY post-AAA+ oligomerization domain-like 236 418 IPR008921 GO:0003677|GO:0006260
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo147g00126 7 266 Core DNA Replication Machinery Family AT1G63160 27.817 1.82e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo147g00126 K07478 - acb:A1S_3427 745.347