Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo147g00054 ATGAGTTTTAAAGACGAATTAGCGGCGCAGGTCGCACAGCGACGGACATTCGCAATTATTTCCCACCCCGATGCGGGTAAAACCACCATGACAGAAAAACTGTTGTTATGGGGTAAAGCAATTCAGGTTGCAGGGATGGTCAAAAGCCGTAAGTCAGACCGTGCTGCTACTTCGGACTGGATGGAAATGGAAAAAGAACGTGGTATTTCTATTACCACTTCTGTCATGCAGTTTCCGTATAAAAAGCATGTCATTAACTTACTAGACACCCCGGGGCATGAAGATTTTTCGGAAGATACCTATCGAACATTAACCGCGGTAGACTCTGCGTTAATGGTGATTGATGGTGCAAAAGGGGTCGAAGAACGAACCATTAAACTTATGGAAGTGTGTCGCATGCGCGATACGCCAATCGTGTCTTTTGTGAACAAAATGGATCGTGAAATTCGTGAGCCATTAGAGTTACTTGATGAAATTGAAAATGTCTTAAAAATTCGTTGTGTACCCCTCACATGGCCTATGGGAACAGGTCGTGATTTTGCAGGTGTGTACAACTTATTAGAAAATAAATTTTACGTTTACAAAGCTGGCTTTGGTTCAACCATTACCGATATTGAAATCCGTGATGGCTATGATTTTCCAGACCTTCGTGAAAAAGTGGGCGATCTGGCTTTTGCTGCATTTGAAGAGTCGTTAGAACTGGTACAAATGGCGAATGATCCACTGGATCGTGAGTTATTTTTACAAGGTAAACAAACCCCAGTATTGTTTGGTACAGCTTTGGGTAACTTTGCTGTTGACCATGTTTTGGATGCCTTTATTAAATGGGCGCCTGAACCGAAGGCACATCCAACCAAAGAACGTATTGTGGACGCAACCGAAGAAGGTTTCACAGGTTTTGTTTTTAAAATTCAAGCCAATATGGACCCAAAACATCGTGACCGTATTGCATTCATGCGAATCTGTTCAGGTAAGTATGAAAAAGGTTTAAAAATGAACCATGTTCGTTTGGGCAAAGATGTACGAATTAGTGATGCGTTGACCTTCCTTGCAGGAGAACGCGAACAACTTGAAGAAGCATGGCCTGGGGATATTATTGGTTTACATAACCACGGGACAATTCAAATTGGCGATGCGTTTTCATCGGGTGAAAATGTTCATTTCACGGGTATTCCTCACTTTGCGCCAGAAATGTTCCGCCGAGTGCGCTTAAAAGATCCGCTTAAGTCAAAACAACTTCAAAAAGGTTTGAAAGAACTGTCTGAAGAAGGTGCGACGCAGGTCTTTATGCCACAAATTAATAATGATTTGATTGTGGGTGCAGTTGGTGTACTTCAGTTTGAAGTGGTGGCTTACCGCTTGAAAGAAGAATACAAAGTCGATTGCGTTTATGAGCCAGTGAACATTAATACGGTACGTTGGGTTTCATGTGATGATGAAAAGAAATTCAATGAATTTAAGAAAAAAGCACATGATCAGTTATCGCTTGATGGCGGCGGTCATTTAACTTATCTCGCACCGAGTCGAGTGAACTTACAGTTAATGCAAGAGCGCTATCCTGACATTCAATTCCGTGCTACGCGTGAACACTAA 1593 0.4212 MSFKDELAAQVAQRRTFAIISHPDAGKTTMTEKLLLWGKAIQVAGMVKSRKSDRAATSDWMEMEKERGISITTSVMQFPYKKHVINLLDTPGHEDFSEDTYRTLTAVDSALMVIDGAKGVEERTIKLMEVCRMRDTPIVSFVNKMDREIREPLELLDEIENVLKIRCVPLTWPMGTGRDFAGVYNLLENKFYVYKAGFGSTITDIEIRDGYDFPDLREKVGDLAFAAFEESLELVQMANDPLDRELFLQGKQTPVLFGTALGNFAVDHVLDAFIKWAPEPKAHPTKERIVDATEEGFTGFVFKIQANMDPKHRDRIAFMRICSGKYEKGLKMNHVRLGKDVRISDALTFLAGEREQLEEAWPGDIIGLHNHGTIQIGDAFSSGENVHFTGIPHFAPEMFRRVRLKDPLKSKQLQKGLKELSEEGATQVFMPQINNDLIVGAVGVLQFEVVAYRLKEEYKVDCVYEPVNINTVRWVSCDDEKKFNEFKKKAHDQLSLDGGGHLTYLAPSRVNLQLMQERYPDIQFRATREH 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo147g00054 530 Gene3D - 15 378 IPR027417 -
Pumo147g00054 530 PANTHER PEPTIDE CHAIN RELEASE FACTOR RF3 6 529 IPR004548 GO:0003924|GO:0005737|GO:0006415
Pumo147g00054 530 Gene3D - 22 276 IPR027417 -
Pumo147g00054 530 SUPERFAMILY Translation proteins 263 394 IPR009000 -
Pumo147g00054 530 CDD RF3_III 396 465 - -
Pumo147g00054 530 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 12 281 IPR000795 GO:0003924|GO:0005525
Pumo147g00054 530 FunFam Peptide chain release factor 3 5 281 - -
Pumo147g00054 530 PRINTS GTP-binding elongation factor signature 16 29 IPR000795 GO:0003924|GO:0005525
Pumo147g00054 530 PRINTS GTP-binding elongation factor signature 102 113 IPR000795 GO:0003924|GO:0005525
Pumo147g00054 530 PRINTS GTP-binding elongation factor signature 138 147 IPR000795 GO:0003924|GO:0005525
Pumo147g00054 530 PRINTS GTP-binding elongation factor signature 66 74 IPR000795 GO:0003924|GO:0005525
Pumo147g00054 530 PRINTS GTP-binding elongation factor signature 86 96 IPR000795 GO:0003924|GO:0005525
Pumo147g00054 530 SUPERFAMILY EF-G C-terminal domain-like 394 469 IPR035647 -
Pumo147g00054 530 NCBIfam peptide chain release factor 3 7 530 IPR004548 GO:0003924|GO:0005737|GO:0006415
Pumo147g00054 530 CDD RF3 14 280 IPR041732 -
Pumo147g00054 530 Hamap Peptide chain release factor 3 [prfC]. 5 528 IPR004548 GO:0003924|GO:0005737|GO:0006415
Pumo147g00054 530 Gene3D Peptide chain release factor 3, domain III 391 530 IPR038467 -
Pumo147g00054 530 FunFam Peptide chain release factor 3 391 530 - -
Pumo147g00054 530 Pfam Elongation factor Tu GTP binding domain 14 278 IPR000795 GO:0003924|GO:0005525
Pumo147g00054 530 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 59 74 IPR031157 -
Pumo147g00054 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 278 IPR027417 -
Pumo147g00054 530 NCBIfam small GTP-binding protein domain 17 163 IPR005225 GO:0005525
Pumo147g00054 530 Pfam Class II release factor RF3, C-terminal domain 388 515 IPR032090 -
Pumo147g00054 530 CDD RF3_II 297 383 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo147g00054 15 151 Eukaryotic Initiation Factors Gene Family AT3G22980 29.197 4.93e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo147g00054 K02837 - acb:A1S_0554 994.956