Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo147g00038 ATGGCTAAGGCTAAGTTTGAACGTAATAAGCCACACGTAAACGTGGGTACAATTGGTCACGTTGACCATGGTAAAACAACTTTAACTGCTGCAATTGCAACAATTTGTGCAAAAACTTACGGCGGTGAAGCTAAAGATTACGCAGCAATTGACTCTGCACCAGAAGAAAAAGCGCGTGGTATTACCATTAATACTTCACACGTAGAATACGATTCTCCAGTTCGTCACTACGCTCACGTAGACTGCCCAGGGCATGCCGATTATGTTAAAAACATGATCACTGGTGCTGCTCAAATGGACGGCGCGATTCTTGTATGTGCTGCGACTGATGGTCCTATGCCACAGACGCGTGAACACATCCTTCTTTCTCGTCAGGTTGGTGTACCTTATATTCTTGTATTCCTTAACAAGTGTGACCTTGTTGATGATGAAGAATTACTTGAATTGGTAGAAATGGAAGTTCGTGAACTTCTTTCTACTTATGACTTCCCAGGTGATGACACTCCAATCATCCGTGGTTCAGCGCTTCAAGCGTTGAATGGTAACGATGGTCCATATGGCGAAAAAGCTGTAATCGACTTAGTTGCTGCACTTGATTCTTATATTCCAGAACCAGAACGTGCGATTGATAAAGCATTCTTAATGCCAATCGAAGATGTATTCTCTATCTCTGGTCGCGGTACTGTTGTAACAGGTCGTGTAGAGTCAGGTATCGTTAAAGTTGGCGAAGAAGTTGAAATCGTTGGTATTAAAGATACAGTTAAAACAACTGTAACTGGCGTAGAAATGTTCCGTAAATTGCTTGACGAAGGTCGTGCAGGCGAGAACTGTGGTGTTCTTCTACGTGGTACTAAACGTGAAGACGTTCAACGTGGTCAAGTATTGACTAAACCAGGTGCAATCAAACCGCACACTAAATTCGATGCAGAAGTATACGTACTTTCTAAAGAAGAAGGTGGTCGTCATACTCCATTCCTTAACGGTTACCGTCCACAGTTCTACTTCCGTACAACTGACGTAACTGGCGCTATTCAGTTGAAAGAAGGCGTTGAAATGGTTATGCCTGGTGACAACGTAGAAATGTCAGTAGAGCTTATTCACCCAATCGCAATGGACCCAGGTCTACGTTTTGCGATTCGTGAAGGTGGTCGTACTGTAGGCGCTGGTGTTGTTGCGAAAGTAACTCTATAA 1191 0.4341 MAKAKFERNKPHVNVGTIGHVDHGKTTLTAAIATICAKTYGGEAKDYAAIDSAPEEKARGITINTSHVEYDSPVRHYAHVDCPGHADYVKNMITGAAQMDGAILVCAATDGPMPQTREHILLSRQVGVPYILVFLNKCDLVDDEELLELVEMEVRELLSTYDFPGDDTPIIRGSALQALNGNDGPYGEKAVIDLVAALDSYIPEPERAIDKAFLMPIEDVFSISGRGTVVTGRVESGIVKVGEEVEIVGIKDTVKTTVTGVEMFRKLLDEGRAGENCGVLLRGTKREDVQRGQVLTKPGAIKPHTKFDAEVYVLSKEEGGRHTPFLNGYRPQFYFRTTDVTGAIQLKEGVEMVMPGDNVEMSVELIHPIAMDPGLRFAIREGGRTVGAGVVAKVTL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo147g00038 396 Gene3D Translation factors 208 336 - -
Pumo147g00038 396 Pfam Elongation factor Tu C-terminal domain 301 394 IPR004160 -
Pumo147g00038 396 CDD EF_Tu 11 205 IPR041709 -
Pumo147g00038 396 SUPERFAMILY Translation proteins 207 303 IPR009000 -
Pumo147g00038 396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 221 IPR027417 -
Pumo147g00038 396 CDD EFTU_III 302 391 - -
Pumo147g00038 396 Pfam Elongation factor Tu GTP binding domain 10 203 IPR000795 GO:0003924|GO:0005525
Pumo147g00038 396 Gene3D - 1 205 IPR027417 -
Pumo147g00038 396 Hamap Elongation factor Tu [tuf]. 1 396 IPR004541 GO:0003746|GO:0005525|GO:0006414
Pumo147g00038 396 Gene3D Translation factors 340 394 - -
Pumo147g00038 396 PANTHER ELONGATION FACTOR TU-RELATED 3 394 - -
Pumo147g00038 396 NCBIfam elongation factor Tu 1 394 IPR004541 GO:0003746|GO:0005525|GO:0006414
Pumo147g00038 396 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 301 394 IPR009001 -
Pumo147g00038 396 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 10 206 IPR000795 GO:0003924|GO:0005525
Pumo147g00038 396 CDD EFTU_II 213 299 IPR033720 -
Pumo147g00038 396 FunFam Elongation factor Tu 208 336 - -
Pumo147g00038 396 PRINTS GTP-binding elongation factor signature 94 105 IPR000795 GO:0003924|GO:0005525
Pumo147g00038 396 PRINTS GTP-binding elongation factor signature 58 66 IPR000795 GO:0003924|GO:0005525
Pumo147g00038 396 PRINTS GTP-binding elongation factor signature 78 88 IPR000795 GO:0003924|GO:0005525
Pumo147g00038 396 PRINTS GTP-binding elongation factor signature 131 140 IPR000795 GO:0003924|GO:0005525
Pumo147g00038 396 PRINTS GTP-binding elongation factor signature 14 27 IPR000795 GO:0003924|GO:0005525
Pumo147g00038 396 FunFam Elongation factor Tu 1 205 - -
Pumo147g00038 396 Pfam Elongation factor Tu domain 2 227 296 IPR004161 GO:0005525
Pumo147g00038 396 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 IPR031157 -
Pumo147g00038 396 NCBIfam small GTP-binding protein domain 13 148 IPR005225 GO:0005525
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo147g00038 1 394 Eukaryotic Initiation Factors Gene Family AT5G60390 29.054 3.39e-40 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo147g00038 K02358 - acb:A1S_0279 718.383