Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo147g00026 ATGATTGAATATATTGCACAAGCCATTTCTCGGACACAACTGACCAAGGCTTTGGAAATTGCCAATGTTAGTTCAGAAACGGAAAGGCTACGTTCAGCGTTGTTATCATCAGTTTCGCATGACTTGCGTTCGCCTTTGGCATCTATGATTGGCGCTGCTGACACGTTGACCAATTACCGTCATTCAATGGATGAAAAAGATCAAGATAGTCTACTTGAAGCGATACGCTTAGAAGGTGAGCGTTTAGATCGTTACATTCAAAACTTATTGGATATGACACGCTTAGGACATGAAGGTTTAAGTCTGAAACGCGATTGGATTGGTGTCGATGAATTGGTGGGTTCGGCTGTTCGTCGTTTGAAACGCTATATGCCTCAGGTCATCGTTGAGGTCGATTTACCTGAAGATACGCTAAGTTTATTTGTGCATGCGGCTTTAATTGAGCAAGCAATTTTTAATGTCTTGGAAAATGCTGCCAAGTTTTCCCCTGAACATCAAGCTGTAACCATTGACGTTACAAAATTGAATGAAAATGAAATAGAAATAGCCATTAGTGATCAAGGTCAAGGCATTCCTGAAGATGAACGTGACCGTATTTTTGATATGTTCTATACAATGGAACGTGGCGATCGTGGGCAATATGGTACGGGTTTGGGATTGACCATTGTCAAAGCGATTATTGGTGCGCATATGGGGAAAATTATGGCGTCTTCAGCCAAGAATAACCAAGATATTGCCTTACGTGCGCAAGGTTATAAAGTATTGCAAGCCGAAAATGGGCAGCAAGGTTTAGAACTGTTGGCACTACAAGGTGCAGATTTGATTATTTTAGATTTAGGCTTACCTGATTTAGATGGTTTTGAGGTGTTATCCGAGTTGCGAAATTGGTCGCATGCACCTGTGATTGTTTTATCTGTCCGTTCTAATGAAGAGGAAAAAATTAAACTCTTGGATGCAGGAGCAAATGATTATGTGACGAAACCCTTTAGTGTTCAAGAACTTATGGCACGGATTCGCGTGTTGTTGAGGCAACATCAAAATACGACAGTTGAAACTGTTGTTTATGATGATCATGTTTTAAAAATTGATTTCGCACAAAGACAGTTTACAGCCTTGCCCATTAGATCCAGAACATAA 1137 0.4046 MIEYIAQAISRTQLTKALEIANVSSETERLRSALLSSVSHDLRSPLASMIGAADTLTNYRHSMDEKDQDSLLEAIRLEGERLDRYIQNLLDMTRLGHEGLSLKRDWIGVDELVGSAVRRLKRYMPQVIVEVDLPEDTLSLFVHAALIEQAIFNVLENAAKFSPEHQAVTIDVTKLNENEIEIAISDQGQGIPEDERDRIFDMFYTMERGDRGQYGTGLGLTIVKAIIGAHMGKIMASSAKNNQDIALRAQGYKVLQAENGQQGLELLALQGADLIILDLGLPDLDGFEVLSELRNWSHAPVIVLSVRSNEEEKIKLLDAGANDYVTKPFSVQELMARIRVLLRQHQNTTVETVVYDDHVLKIDFAQRQFTALPIRSRT 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo147g00026 378 SMART REC_2 235 338 IPR001789 GO:0000160
Pumo147g00026 378 Gene3D - 102 246 IPR036890 -
Pumo147g00026 378 SUPERFAMILY CheY-like 246 348 IPR011006 -
Pumo147g00026 378 SMART HisKA_10 30 98 IPR003661 GO:0000155|GO:0007165
Pumo147g00026 378 Gene3D - 247 371 - -
Pumo147g00026 378 PRINTS Bacterial sensor protein C-terminal signature 180 194 IPR004358 GO:0016310|GO:0016772
Pumo147g00026 378 PRINTS Bacterial sensor protein C-terminal signature 198 208 IPR004358 GO:0016310|GO:0016772
Pumo147g00026 378 PRINTS Bacterial sensor protein C-terminal signature 214 232 IPR004358 GO:0016310|GO:0016772
Pumo147g00026 378 Gene3D - 22 97 - -
Pumo147g00026 378 Pfam Response regulator receiver domain 246 339 IPR001789 GO:0000160
Pumo147g00026 378 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 147 239 IPR003594 -
Pumo147g00026 378 ProSiteProfiles Histidine kinase domain profile. 37 238 IPR005467 -
Pumo147g00026 378 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 25 98 IPR036097 GO:0000155|GO:0007165
Pumo147g00026 378 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 88 240 IPR036890 -
Pumo147g00026 378 Pfam His Kinase A (phospho-acceptor) domain 31 97 IPR003661 GO:0000155|GO:0007165
Pumo147g00026 378 ProSiteProfiles Response regulatory domain profile. 221 342 IPR001789 GO:0000160
Pumo147g00026 378 PANTHER SENSOR PROTEIN KDPD 2 240 - -
Pumo147g00026 378 CDD HisKA 28 94 IPR003661 GO:0000155|GO:0007165
Pumo147g00026 378 SMART HKATPase_4 142 253 IPR003594 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo147g00026 22 238 Histidine Kinase Gene Family AT5G10720 25.101 3.65e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo147g00026 Response_reg 3.2e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo147g00026 K07646 - acb:A1S_2138 348.206