Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo144g00006 ATGGTTACACAACAGCCACAGCTTCAGGTTCAGAATCAGCCTCAACAGCCCACACCCTCTTCACAAGATGAGGCCTTGAAGAGGAACACCGATTGTGTCTACTTCCTTGCATCTCCTTTGACATGCAAAAAGGGAAATGAATGTGAGTACCGCCATAGTGAGTATGCACGTGTTAATCCTAGGGACTGTCGGTATTGGTTGAGTGGCAATTGCTTGAATCCGAAATGTTCATTTCGTCATCCGCCTCTTGATGGCTTGTTAGGAACACAGGCAGCAACTGCTGGCGGGCCATCTGTACCCCCACCACAGATTCCAACAGCATCTGCAACACATGCACCTTATAATTCCAGTAAACAAGCTGTCCCTTGCTTTTTCTTCCAAAAGGGGCTTTGCTTAAAAGGTGACAGATGTGCCTTCTTGCATGGACCTCCTATTCCTAACACTGGTAATAAAGTACCTGGTCAGGTTCCAGTGACTAGCCAAGGAGCTGAGAATCCAAGTTTTAAGAAGCCTTTTGTCAGCAATGAAAAGTATACTCAGGAGAGGAAAACTTCCCAAGGAAATGTTGCAAAGTCAGGTGGAGGTCCTGAAGCTAAACCTGCCCCAAAAATTGAAACTGCTCCTCAAAGAAATACGTTTGAATTGGAGAAGAAAGTGCCACAACCATCTGTGGGATTTGATAATGAGGCTGCTAGATTTAAGACAAGTTCTCCACCAGTGACCAATGGCCCTACTGTACCCCGGTCAAACCGTCCGCATCAAGCTCGTGTGCCAGATGATCACAATTTCCAGAGTGGCAAGGACAGTGATGAGTTTCTCAGAGAATCATCTCCTGGGTTTGATGTTCTTGTAGCTGATGAACTTAGGAATTCTGATTACTACCATGGGGAAGATGAATTTGGTAAAGCAAGAGGTCAAGATGAAAGGAACTTAGACTCTTTGAATGAATATGATTTAGGACATTCTGGTGATTATAATTTAGCAGCTGATATTGATCGAGAAAGATTTCGTGTGCCCCAAGGTTATGAGTCATATGATCACATGCAGGATCTGTATGGTTGGGAGCAGCATAGAAAGCCCTCAGCCCATTTAGACAGAAGGACTCGCCGCAGATCTGACAGTCCTGAAAATGCTGAGGTCTCAGATCTCCGACATCATTTATCCAAGCGCAGGAAGGGCAATGGTTTGAAATCTGTTGTCAGTCATGATTATGCCCTTGAGGGCCATGGTGAGGAACAAAGTCGCCGGTCCTTCTCTCGGAAGGATTCACTCGAGTCACCTCTGAATGAGAGCTCCCTTGGTAATCGCTTCCGAGGTAGAATAAAACTTCCAGCAAATGGTGGTGCTGATCACCTAGACAGGGAAGACAGGGGAAGATTTAGGAACAGATTGTCATCTGGAAGGTTGCCGGCCACTCACCAGGGAAGGGTCCATGACAGAATAAGAGGAAGGTTGCCAGATGATGAGAGGAGAAACTCCAGGGATCGATTGATGGGGAGAGAGCTACTGGGTGATAGGAGTGATTTTGCTGGGCCAAAAAGTCTTTCTGAACTTAAAAATGGGAGGAACACTGAGAATAGGGAGCAACAATCACTGGGAAAGAGAAGAAGTTTAAGGGATGATCGCCCACAATCTGAAGATGATTTCCTGTTTGAAGGTCCAAAACCTCTTAGTGAAATTCTGAAGGAGAAGAGAGGAGTTGGAGCTGATGCAGACTCTGGAAATGGCAAATTATCTGACAATACCAATGGCTCGGATCCTATGCCTTTCGGAAACACACAAAATGGATTGCTGTCTGAGACCAAGGAAGATGTCAAGAATCTTCCACCAAATAATGAAGAAGAATCCAAGCTTGAGGTCACTGATGCAGCTGGAGGAGACGATGGCCAATACGAGGAGGGAATGGTGTACGATGAAGCGGGTGAGGATCAGTATTATGAAGGTGATGATCAGAGAGATGGGGACTATGAGTATGAACAAGGTGAAGGTGATGAGGGATACTATGAGTATGAACAAGGTGAAGAGGGTGAAAATCAAGAGGAAGAATACATGGATGAAGAAGATGGGGATGATTTTGCTAAGAAGATTGGTGTCATTCATTCATAA 2106 0.453 MVTQQPQLQVQNQPQQPTPSSQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCRYWLSGNCLNPKCSFRHPPLDGLLGTQAATAGGPSVPPPQIPTASATHAPYNSSKQAVPCFFFQKGLCLKGDRCAFLHGPPIPNTGNKVPGQVPVTSQGAENPSFKKPFVSNEKYTQERKTSQGNVAKSGGGPEAKPAPKIETAPQRNTFELEKKVPQPSVGFDNEAARFKTSSPPVTNGPTVPRSNRPHQARVPDDHNFQSGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKARGQDERNLDSLNEYDLGHSGDYNLAADIDRERFRVPQGYESYDHMQDLYGWEQHRKPSAHLDRRTRRRSDSPENAEVSDLRHHLSKRRKGNGLKSVVSHDYALEGHGEEQSRRSFSRKDSLESPLNESSLGNRFRGRIKLPANGGADHLDREDRGRFRNRLSSGRLPATHQGRVHDRIRGRLPDDERRNSRDRLMGRELLGDRSDFAGPKSLSELKNGRNTENREQQSLGKRRSLRDDRPQSEDDFLFEGPKPLSEILKEKRGVGADADSGNGKLSDNTNGSDPMPFGNTQNGLLSETKEDVKNLPPNNEEESKLEVTDAAGGDDGQYEEGMVYDEAGEDQYYEGDDQRDGDYEYEQGEGDEGYYEYEQGEEGENQEEEYMDEEDGDDFAKKIGVIHS 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo144g00006 701 MobiDBLite consensus disorder prediction 447 463 - -
Pumo144g00006 701 MobiDBLite consensus disorder prediction 253 274 - -
Pumo144g00006 701 MobiDBLite consensus disorder prediction 575 601 - -
Pumo144g00006 701 ProSiteProfiles Zinc finger C3H1-type profile. 26 55 IPR000571 GO:0046872
Pumo144g00006 701 MobiDBLite consensus disorder prediction 1 24 - -
Pumo144g00006 701 Pfam RNA-binding, Nab2-type zinc finger 122 142 - -
Pumo144g00006 701 MobiDBLite consensus disorder prediction 234 249 - -
Pumo144g00006 701 Pfam Zinc-finger containing family 27 82 IPR041686 -
Pumo144g00006 701 MobiDBLite consensus disorder prediction 520 570 - -
Pumo144g00006 701 MobiDBLite consensus disorder prediction 152 191 - -
Pumo144g00006 701 MobiDBLite consensus disorder prediction 360 690 - -
Pumo144g00006 701 Gene3D - 113 188 - -
Pumo144g00006 701 MobiDBLite consensus disorder prediction 145 274 - -
Pumo144g00006 701 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Pumo144g00006 701 SMART c3hfinal6 27 54 IPR000571 GO:0046872
Pumo144g00006 701 SMART c3hfinal6 59 82 IPR000571 GO:0046872
Pumo144g00006 701 Gene3D - 17 83 - -
Pumo144g00006 701 SUPERFAMILY CCCH zinc finger 118 142 IPR036855 GO:0046872
Pumo144g00006 701 MobiDBLite consensus disorder prediction 632 688 - -
Pumo144g00006 701 FunFam Zinc finger CCCH domain-containing protein 17 20 83 - -
Pumo144g00006 701 MobiDBLite consensus disorder prediction 473 507 - -
Pumo144g00006 701 MobiDBLite consensus disorder prediction 404 423 - -
Pumo144g00006 701 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 23 699 - -
Pumo144g00006 701 MobiDBLite consensus disorder prediction 360 386 - -
Pumo144g00006 701 MobiDBLite consensus disorder prediction 606 622 - -
Pumo144g00006 701 ProSiteProfiles Zinc finger C3H1-type profile. 57 83 IPR000571 GO:0046872
Pumo144g00006 701 ProSiteProfiles Zinc finger C3H1-type profile. 117 144 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo144g00006 zf-CCCH_3 4.5e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo144g00006 - - gmx:102669253 1202.19