Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo143g00019 ATGTCGATGGTGCTGAGGAAGATGTGGGAAATGGCGTCGTGGAGATCTGATTCATCAACGTCAGCATCATCATCGGCATCATCACTAGAAGTGGCACGTTCTGACATGGGTGAGTTGGAGCTGCTACCCAGTGACATATTGATGCAAATTCTGAGACTTTTGGGTCCAAAAGAGGCCGCAAAGTTGAGTGTGGTTTGCAAGGCTTTGAGATCCCATGTGTCTGATAACAGACTTTGGGTTCACTTTCTTCAGACCCATCAGGCTGAACCCTCTGGTGATTCTGTCTTCTTTGCTGAGACCACCTTGAGCTCTGGCTACCCTCTTCCGCCCTTTGTTGGCCATTGGCCCCAGCTATCATTCAAGCATATTTATGGCCAGAGAGCACAAGTTCCTGGTTCTATTATCATCGATGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATACGCATGTCCATCAGGGCGATCAGCAACATTTTTGGAATTTGGTGACATTGAGTCACCAATGTATACTAGGCTTCGACATTTTTTTGCAACTATTTATAACAGGATGCAGGTGAAACCGAATAAACAACCAGTTATTGTTTCTGTACCAATATGCCATTATGATGATACCGAATCAGCCAAAGCATCGAGACAACAGCTTAAAGAGGCAATTTATGCTTCCTTGTTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGCCACTCTAGCTCTGTACGCTGCGAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACATCTATTGTTCCAATTTTAAATGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGGCTGGGAGCACTGAAACTTACAGGATTTCTTAGGGAGAAGATGCAACTGAATAACTTAAGTTTTCAATCTTTGTACACTGTTCGCACATTGAAAGAGAATCTATGCCATGTTGCACTTGATTATGAAGCTGAGCTATTGAAAGATACAAAAGCATCATTTGAAGCTGCAGGAGAAGGATGGTTTACCCTTTCAAAAGAGAGGTTTCAGACAGCAGAGATCCTATTCCAGCCACATCTTGCCGGAGTGTAA 1089 0.4353 MSMVLRKMWEMASWRSDSSTSASSSASSLEVARSDMGELELLPSDILMQILRLLGPKEAAKLSVVCKALRSHVSDNRLWVHFLQTHQAEPSGDSVFFAETTLSSGYPLPPFVGHWPQLSFKHIYGQRAQVPGSIIIDGGSGYCKFGWSKYACPSGRSATFLEFGDIESPMYTRLRHFFATIYNRMQVKPNKQPVIVSVPICHYDDTESAKASRQQLKEAIYASLFDMNVPAVCAVNQATLALYAAKRTSGIVVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQLNNLSFQSLYTVRTLKENLCHVALDYEAELLKDTKASFEAAGEGWFTLSKERFQTAEILFQPHLAGV 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo143g00019 362 SMART fbox_2 42 82 IPR001810 GO:0005515
Pumo143g00019 362 Pfam F-box domain 41 80 IPR001810 GO:0005515
Pumo143g00019 362 SUPERFAMILY F-box domain 32 90 IPR036047 GO:0005515
Pumo143g00019 362 Pfam Actin 180 360 IPR004000 -
Pumo143g00019 362 SUPERFAMILY Actin-like ATPase domain 247 361 IPR043129 -
Pumo143g00019 362 Gene3D - 130 247 - -
Pumo143g00019 362 ProSiteProfiles F-box domain profile. 36 82 IPR001810 GO:0005515
Pumo143g00019 362 PANTHER ACTIN 175 361 IPR004000 -
Pumo143g00019 362 Gene3D - 26 129 - -
Pumo143g00019 362 SUPERFAMILY Actin-like ATPase domain 133 253 IPR043129 -
Pumo143g00019 362 Gene3D Actin; Chain A, domain 4 283 361 - -
Pumo143g00019 362 SMART actin_3 131 362 IPR004000 -
Pumo143g00019 362 Gene3D - 250 282 - -
Pumo143g00019 362 CDD NBD_sugar-kinase_HSP70_actin 134 278 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo143g00019 180 362 Cytoskeleton Gene Families AT3G12110 32.812 1.62e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo143g00019 K16616 - gmx:100791973 654.825