Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo12g00004 ATGTTGGAACAGAGATTCGTGATGGGAAAAAATGAGTTTCTCACTCCTAAAGCAATTGCCAATCGAATCAAGGCAAAAGGATTGCAGAAGCTTCGGTGGTATTGCCAGATGTGTCAGAAGCAGTGCCGAGATGAGAATGGGTTTAAATGCCATTGCATGAGTGAAGGGCACCAGCGTCAAATGCAGATTTTTGGACAAAACCCACACCGGATAGTTGATGGCTATTCTGAAGAGTTTGAGAGCTCTTTTCTGGAGCACATGAAACGCAGCCACCGATTCAGCCGTGTGGCAGCCACTGTAGTTTATAATGAATACATAAACGATAGACACCACGTTCATATGAACTCCACTCAGTGGGCTACGCTGACTGAGTTTGTTAAGTACTTGGGTCGAACTGGCAAATGTAAGGTTGAGGAAACACCCAAGGGATGGTTCATTACATACATAGATAGAGATTCAGAAACCCTTTTCAAAGAGAGGATGAAGAATAAGAGAATCAAGGCAGATATGGCAGATGAAGAAAAGCAAGAAAAGGAGATCATGAAACAGATTGAAAAGGCTGAGCAAATGATGCAGCCGCCTACTTCTGAGGCTGATCAGCCTTCACAGGTTGAGCCTCCGAGGGAACTAAATATGGAAGATGGAATCAAGATAGGATTTTCTCTTGGATCATCATTGGCTAAACCTGTGGTCAAGGAAAAACGGGAGGCATCAAGGGTGGTGTTTGATGAGGGTGATGAAGAGAAATATAATGAAAGGAATCCTGGAAACAATTTGAAGAGGAAAGAAAGTGGTGGTGGAAAATCAGCTTTGGATGAAATGATGAGGGAAGAAGAGAAGAAAAAGGAAAAAATTAATCGGAAGGATTATTGGTTGCATGAGGGAATTGTTGTCAAGGTTATGAGCAAAGTCTTGGCAGAGAAGGGGTACTACAAGCAAAAGGGTGTTGTGCGGAAGGTGATTGACAAGTATGTTGGGGAAATAGAAATGCTTGAAAGCAAGCATGTGCTCAGAGTTGATCAGGCAGAGCTTGAAACTGTGATTCCACAAGTTGGGGGCCGGGTTAAAATAGTCAATGGTGCATATCGAGGATCAATTGCTAAGCTGTTGGGGGTGGATACAGATAATTTTTGTGCCAAGGTGCAGATTGAGAAAGGACCCTATGATGGCAGAGTACTTCAAGCTATGGAATATGAGGACATTTGTAAACTAGCCTAG 1218 0.4302 MLEQRFVMGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQNPHRIVDGYSEEFESSFLEHMKRSHRFSRVAATVVYNEYINDRHHVHMNSTQWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKERMKNKRIKADMADEEKQEKEIMKQIEKAEQMMQPPTSEADQPSQVEPPRELNMEDGIKIGFSLGSSLAKPVVKEKREASRVVFDEGDEEKYNERNPGNNLKRKESGGGKSALDEMMREEEKKKEKINRKDYWLHEGIVVKVMSKVLAEKGYYKQKGVVRKVIDKYVGEIEMLESKHVLRVDQAELETVIPQVGGRVKIVNGAYRGSIAKLLGVDTDNFCAKVQIEKGPYDGRVLQAMEYEDICKLA 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo12g00004 405 MobiDBLite consensus disorder prediction 188 208 - -
Pumo12g00004 405 FunFam DNA/RNA-binding protein KIN17, putative 349 405 - -
Pumo12g00004 405 CDD KOW_KIN17 351 404 IPR041995 -
Pumo12g00004 405 FunFam DNA/RNA-binding protein KIN17, putative 68 167 - -
Pumo12g00004 405 Gene3D - 349 405 IPR014722 -
Pumo12g00004 405 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 8 405 IPR037321 -
Pumo12g00004 405 Coils Coil 268 288 - -
Pumo12g00004 405 Coils Coil 163 190 - -
Pumo12g00004 405 Gene3D - 67 167 IPR038254 -
Pumo12g00004 405 SMART Kin17_mid_2 59 185 IPR019447 -
Pumo12g00004 405 SUPERFAMILY beta-beta-alpha zinc fingers 33 72 IPR036236 -
Pumo12g00004 405 Gene3D - 295 348 - -
Pumo12g00004 405 FunFam DNA/RNA-binding protein kin17-like 295 348 - -
Pumo12g00004 405 Pfam KN17 SH3-like C-terminal domain 287 340 IPR041330 -
Pumo12g00004 405 MobiDBLite consensus disorder prediction 246 274 - -
Pumo12g00004 405 Pfam Domain of Kin17 curved DNA-binding protein 59 184 IPR019447 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo12g00004 8 405 C2H2 Transcription Factor Family AT1G55460 70.264 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo12g00004 K13102 - gmx:100785931 754.977