Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo125g00009 ATGTTGAATTTTTGTATCATAGTGTTTTGGTTATGTGTTTTTTGTCTAGTGCATCATGTGAAGCTAGCAGCGTCTTTTCTTTTCCGTTTTGTTGTGTTTTATTTTGTTTGTTTTTGTTGTGAATGGATGCAGATATTAGAGGGACTTGTTAAGCTACCTGACAACAGGGAATGTGCAGACTGCAGGACCAAGGCACCACGATGGGCAAGTGTGAACTTAGGGATATTCATTTGCATGCAATGTTCAGGAATTCACCGGAGTCTTGGAGTGCATATATCAAAGGTGCGGTCCACAACTTTGGATACATGGTTGCCAGATCAAGTTTCTTTTATGCAATTAATGGGTAATGCAAAGTCAAATAAGCACTGGGAGGCAGAATTACCGCCAAATTTTGACAGAAATGGATATGGAATCGAGAAATTTATTCGTTTCAAGTATGTGGAGAAAAGATGGGCTTCGAAAGGTGGACTACAACCAGCTACAAAATCAGCTGAAATAATCTTTAACTCGAATGAGTCACCAGCTGCTGGGGCCAAGAGTGCTATTCAAAAGAATAGGAGATTGTCTCTTGAGGAAAGCATTCTTGTGAAACACGTGGCACAAATTCGGCCTCCAATAACAAGATCTCATGAGGTATTCATGTTTAATGTCAAGTTCAATCTGTGA 666 0.3979 MLNFCIIVFWLCVFCLVHHVKLAASFLFRFVVFYFVCFCCEWMQILEGLVKLPDNRECADCRTKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQLMGNAKSNKHWEAELPPNFDRNGYGIEKFIRFKYVEKRWASKGGLQPATKSAEIIFNSNESPAAGAKSAIQKNRRLSLEESILVKHVAQIRPPITRSHEVFMFNVKFNL 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo125g00009 221 CDD ArfGap 46 146 - -
Pumo125g00009 221 Gene3D Arf GTPase activating protein 39 156 IPR038508 -
Pumo125g00009 221 SUPERFAMILY ArfGap/RecO-like zinc finger 43 153 IPR037278 -
Pumo125g00009 221 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 43 210 IPR044520 GO:0005096
Pumo125g00009 221 FunFam stromal membrane-associated protein 1 isoform X1 39 156 - -
Pumo125g00009 221 SMART arf_gap_3 43 159 IPR001164 GO:0005096
Pumo125g00009 221 Pfam Putative GTPase activating protein for Arf 45 154 IPR001164 GO:0005096
Pumo125g00009 221 PRINTS HIV Rev interacting protein signature 55 74 IPR001164 GO:0005096
Pumo125g00009 221 PRINTS HIV Rev interacting protein signature 74 91 IPR001164 GO:0005096
Pumo125g00009 221 PRINTS HIV Rev interacting protein signature 95 116 IPR001164 GO:0005096
Pumo125g00009 221 ProSiteProfiles ARF GTPase-activating proteins domain profile. 43 159 IPR001164 GO:0005096
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo125g00009 46 162 C2H2 Transcription Factor Family AT4G05330 41.525 2.78e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo125g00009 K12486 - gmx:100816853 350.132