Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo120g00003 ATGGAATGGTTGTCAGTGTTTGTGGAGGACTGTTTTTCTAGTAGGCCAAGTTGCCTCTTGGCACCCCTGGTGTTCAAACCACAAGCACCAGCACCAAGCCTTCAAGCACAATGCAAAGACCCCAACAAAGCCACTGTCCCTTGCAAAATTTTGCTGTGCCAGGGAAAAGCCAGGAGCAAGAGGAAGAGGCTTTCAGCCCCCAGAACAAAAGACACTCTAAGCACATGGTCACAACAGCACTTCACCACACAAAGTGAAGGGTTGAGTTCTGACCCTCCTCTTTTGAAACAAGCATATTGGTTGGCTGATAGTGAACTCATTGTCCCCAAGAAGAAGAAGGATGTTGAGCAAGAAGGGGTGATGATGACCAAAGTGGTGGAAGAAGAAGAAGGGGTTAATGTGGACCTTGTGGTGGTGAGGAAGGAGAAATTGGGGGAAGATTATAATTGTGAGGAGGGTGAAGTTAACAATAGTAGTAATAATAATGGGCAGCAGCACCCAATTCCAAGAAGGTGCACACATTGTCTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTGGGGCCAAAAACACTATGCAATGCATGTGGGGTGAGGTACAAGTCTGGAAGGTTGTTGCCAGAGTATAGGCCAGCCAAGAGTCCTACTTTTGTAAGCTATTTGCATTCCAACTCACACAAGAGAGTCATGGAGATGAGAATGGGTGTTCTCTCTACAGAGAAGTAG 729 0.4746 MEWLSVFVEDCFSSRPSCLLAPLVFKPQAPAPSLQAQCKDPNKATVPCKILLCQGKARSKRKRLSAPRTKDTLSTWSQQHFTTQSEGLSSDPPLLKQAYWLADSELIVPKKKKDVEQEGVMMTKVVEEEEGVNVDLVVVRKEKLGEDYNCEEGEVNNSSNNNGQQHPIPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKRVMEMRMGVLSTEK 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo120g00003 242 MobiDBLite consensus disorder prediction 69 90 - -
Pumo120g00003 242 SMART GATA_3 166 220 IPR000679 GO:0006355|GO:0043565
Pumo120g00003 242 FunFam GATA transcription factor 160 241 - -
Pumo120g00003 242 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 167 230 - -
Pumo120g00003 242 ProSiteProfiles GATA-type zinc finger domain profile. 170 202 IPR000679 GO:0006355|GO:0043565
Pumo120g00003 242 PANTHER GATA TRANSCRIPTION FACTOR 2 237 - -
Pumo120g00003 242 MobiDBLite consensus disorder prediction 61 90 - -
Pumo120g00003 242 Pfam GATA zinc finger 172 206 IPR000679 GO:0006355|GO:0043565
Pumo120g00003 242 ProSitePatterns GATA-type zinc finger domain. 172 197 IPR000679 GO:0006355|GO:0043565
Pumo120g00003 242 Gene3D - 162 239 IPR013088 GO:0006355|GO:0008270
Pumo120g00003 242 CDD ZnF_GATA 171 218 IPR000679 GO:0006355|GO:0043565
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo120g00003 1 234 C2C2-Gata Transcription Factor Family AT4G32890 36.585 1.71e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo120g00003 GATA 9.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo120g00003 - - pvu:PHAVU_004G079200g 314.694