Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02338 ATGGCAAAACCTATATCTAAAATGGGTTCGCGTAAAAATGAACGTATTGGTCCGCATAAGCATACTCATAAAATACCAAAGGGAGTTATTCATGTTCAAGCTAGTTTCAACAATACCATTGTGACTGTTACAGATGTACGAGGTCGGGTGATTCCTTGGTCCTCCGCCGGTACTTGGGGATTCAAGGGTACACGAAGGGGGACACCTTTTGCCGCTCAAACTGCAGCAAGAAATGCTCTTCAAACAGTATCGGATCAAGGCATACAACGAGCAGAAGTCATGATAAAGGGTCCTGGTCTCGGAAGACATGCGGCATTAAGAGCTATTCGTAGAAGTGGTATACTATTAAATTTTATACGAGATGTAACTCCTATGCCACATAATGGATGTAGGTCTCCTAAAAAAAGACGTGTGTAA 417 0.4245 MAKPISKMGSRKNERIGPHKHTHKIPKGVIHVQASFNNTIVTVTDVRGRVIPWSSAGTWGFKGTRRGTPFAAQTAARNALQTVSDQGIQRAEVMIKGPGLGRHAALRAIRRSGILLNFIRDVTPMPHNGCRSPKKRRV 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02338 138 NCBIfam 30S ribosomal protein S11 20 135 IPR019981 GO:0003735|GO:0005840|GO:0006412
Pumo11g02338 138 Hamap 30S ribosomal protein S11 [rpsK]. 7 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
Pumo11g02338 138 ProSitePatterns Ribosomal protein S11 signature. 106 128 IPR018102 -
Pumo11g02338 138 Pfam Ribosomal protein S11 28 137 IPR001971 GO:0003735|GO:0005840|GO:0006412
Pumo11g02338 138 MobiDBLite consensus disorder prediction 1 22 - -
Pumo11g02338 138 SUPERFAMILY Translational machinery components 24 138 - -
Pumo11g02338 138 FunFam 30S ribosomal protein S11, chloroplastic 11 138 - -
Pumo11g02338 138 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 5 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
Pumo11g02338 138 Gene3D Ribosomal protein S11 9 138 IPR036967 GO:0003735|GO:0005840|GO:0006412
Pumo11g02338 138 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 17 136 IPR001971 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02338 Pumo-Chr11 56244805 56245221 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02338 1 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 35.766 3.00e-17 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02338 K02948 - gmx:3989330 251.136