Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02317 ATGAGTACACAGCAGCAGCTTCCATGTGACAGCGAAGGCGCGTGTATGGTGTGCAAGGCCGTGCCTGGAGAAGAAGAGAGACTGGTATGCATCACGTGTGACACCCCTTGGCACGTGCCCTGTCTGTCCGCCCCTCCACCCACTCTGGCCGCCACCACTCGCTGGCTATGCCCTGATTGTTCTATTCTCGACTCTGATGTTCCGCCACTCCCTGCTCCAGTCCGCAACGAACTCGTCGCTGCAATGCTCGCCGTTGAAAATGACACTTCTCTCACCCAACAACAGAAAGCCAGAAAACGACAAGAGCTTATGACCGGAAAGGCTCCCGCAGAAGAAGACGAGGATGAACCGAATCAAGCGTCTGTATCGGATATTCTTTCTAGATCTCTCAACTGCTCCATCTGTATCCAGTTACCGGAGAGGCCCGTCACGACTCCTTGTGGGCACAGTTTCTGTTTGAAGTGCTTTGAGAAATGGGTTCGGCAAGGGAAGAGGAATTGTGTAAAGTGCCGGCAGATTATTCCGGCGAAGATGGCAAGCCAGCCCCGTATAAATTCTGCATTGGTATTTGCAATACGGATGGCGAGGCAGGCTTCAAACAATAATGGCAGTGGCAGTGGCGGAGGAGTGAGGAGTGTTAACCATTTCCTTCACAATCAAGATAGACCTGACGAGCCATTTACTACTGAACGCGCGCAGAGGAGTGGTCGCGCCAACGCAGCAAGTGGAAAAATATTTGTGACAGTGCCTACGGATCATTTTGGTCCAATAACGGCAGAGAATGACCCTGTGCGGAATCGGGGTTTGCTGGTAGGTGAAACTTGGAGAGACAGACTGGAATGCCGGCAATGGGGTGCTCACTTCGTCCCTGTGGGTGGCATTGCTGGACAATCAGATCGTGGTGCACAATCTGTTGTTCTTTCTGGTGGTTATGTCGATGACGAGGATCATGGAGAATGGTTTCTCTACACTGGAAGCGGCGGTAAGGATCTTAGCGGCAACAAACGCACCAACAAGAGTCACTCGTTTGACCAGAAATTTGAAAAGTACAACCGTGCACTTCAAGTTAGTTGTCTTCAGGGTTATCCAGTTCGAGTTGTCAGCAGATCTCACAAAGAAAAGCGATCCTCATATGCCCCCGAGACTGGCGTGCGGTATGATGGAATTTATAGAATTGAAAAGTGCTGGCAGATAGCGGGATTGCAGGGTTTCAAAGTCTGCCGGTATCTATTCGTTAGGTGTGACAATGAACCTGCCCCTTGGACAAGTGATGATCATGGAGATAGGCCCAGACCCTTGCCGGTCATTCGTGAACTGAAAAAGGCTACAGTCATATATGAAAGGACCGAAGCTCCATCTTGGGATTTTGATGAGGAAGATTCTCGTTGGAAGTGGAAGAAACCACCACCTCCCAGCAGACAAAAGGTACAAAATGTGGAACCCGTGGAGGTAGCAAGGGCAAAGTCAGATAAAGAAGTAAAGAAATTCCAACTTAAGTCAATCAAGGAACAATTGCAGAGAGGGTTCTCGTGCATGATATGCAAGGAGGTTATGGTTTCACCAGTGACAACACCGTGTGCTCATAACTTCTGCAAGTCCTGTTTGGAAGGTGAATTTGCAGGTCAGGCTTTTGTGAAGGAGAGAAGTAAGGGTGGGAGAACACTTAGGTCCCAAAAAAATGTGATGAAATGTCCTTCTTGTTCTATTGACATTTCTGATTATCTTCAGAACATTCAGGTTGATGTAGATTTGAAGAGTGCGATTGAGTCATTGAAAGCCAAGGTTGAAGAAATTGGAGAATCAGTGGAGTCAAGTGAAGATGCAGATGGGTTACAGGATGATGGCGCTGGCAAGGATGAAGATACTGACTCAGGAAACAAAAATTCTGTAGAGGAGTTGAATGGTCTACCTGAAGGATCTGATGTTGGTGAGCTTAAAGATACCAATAAGGGTCCAGATCCAGCAGTGGAGTGCAATGGAAAGAGAAAGAAAGGTGATTATGGAAATCAATCGCCTGATGATAAAATGGAAAAAAGAGGTAAAAAAATACAAAAAGATTGA 2061 0.475 MSTQQQLPCDSEGACMVCKAVPGEEERLVCITCDTPWHVPCLSAPPPTLAATTRWLCPDCSILDSDVPPLPAPVRNELVAAMLAVENDTSLTQQQKARKRQELMTGKAPAEEDEDEPNQASVSDILSRSLNCSICIQLPERPVTTPCGHSFCLKCFEKWVRQGKRNCVKCRQIIPAKMASQPRINSALVFAIRMARQASNNNGSGSGGGVRSVNHFLHNQDRPDEPFTTERAQRSGRANAASGKIFVTVPTDHFGPITAENDPVRNRGLLVGETWRDRLECRQWGAHFVPVGGIAGQSDRGAQSVVLSGGYVDDEDHGEWFLYTGSGGKDLSGNKRTNKSHSFDQKFEKYNRALQVSCLQGYPVRVVSRSHKEKRSSYAPETGVRYDGIYRIEKCWQIAGLQGFKVCRYLFVRCDNEPAPWTSDDHGDRPRPLPVIRELKKATVIYERTEAPSWDFDEEDSRWKWKKPPPPSRQKVQNVEPVEVARAKSDKEVKKFQLKSIKEQLQRGFSCMICKEVMVSPVTTPCAHNFCKSCLEGEFAGQAFVKERSKGGRTLRSQKNVMKCPSCSIDISDYLQNIQVDVDLKSAIESLKAKVEEIGESVESSEDADGLQDDGAGKDEDTDSGNKNSVEELNGLPEGSDVGELKDTNKGPDPAVECNGKRKKGDYGNQSPDDKMEKRGKKIQKD 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02317 686 Gene3D - 235 434 IPR036987 -
Pumo11g02317 686 SUPERFAMILY RING/U-box 125 188 - -
Pumo11g02317 686 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 601 IPR045134 -
Pumo11g02317 686 Coils Coil 588 608 - -
Pumo11g02317 686 MobiDBLite consensus disorder prediction 643 686 - -
Pumo11g02317 686 SUPERFAMILY RING/U-box 503 592 - -
Pumo11g02317 686 SMART ring_2 132 170 IPR001841 -
Pumo11g02317 686 SMART ring_2 15 60 IPR001841 -
Pumo11g02317 686 SMART ring_2 511 567 IPR001841 -
Pumo11g02317 686 MobiDBLite consensus disorder prediction 90 121 - -
Pumo11g02317 686 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Pumo11g02317 686 MobiDBLite consensus disorder prediction 217 231 - -
Pumo11g02317 686 ProSiteProfiles Zinc finger RING-type profile. 132 171 IPR001841 -
Pumo11g02317 686 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 198 IPR013083 -
Pumo11g02317 686 ProSiteProfiles YDG domain profile. 264 413 IPR003105 -
Pumo11g02317 686 CDD RING-HC_ORTHRUS_rpt1 129 175 IPR047498 -
Pumo11g02317 686 MobiDBLite consensus disorder prediction 598 686 - -
Pumo11g02317 686 SUPERFAMILY FYVE/PHD zinc finger 4 67 IPR011011 -
Pumo11g02317 686 SMART PHD_3 14 61 IPR001965 -
Pumo11g02317 686 SMART G9a_1 259 417 IPR003105 -
Pumo11g02317 686 Pfam Zinc finger, C3HC4 type (RING finger) 132 170 IPR018957 GO:0046872
Pumo11g02317 686 MobiDBLite consensus disorder prediction 200 242 - -
Pumo11g02317 686 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 235 431 - -
Pumo11g02317 686 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 489 610 IPR013083 -
Pumo11g02317 686 MobiDBLite consensus disorder prediction 611 627 - -
Pumo11g02317 686 FunFam E3 ubiquitin-protein ligase ORTHRUS 3 490 615 - -
Pumo11g02317 686 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 62 IPR013083 -
Pumo11g02317 686 FunFam Predicted protein 94 197 - -
Pumo11g02317 686 SUPERFAMILY PUA domain-like 238 437 IPR015947 -
Pumo11g02317 686 ProSiteProfiles Zinc finger RING-type profile. 511 568 IPR001841 -
Pumo11g02317 686 ProSitePatterns Zinc finger RING-type signature. 526 535 IPR017907 -
Pumo11g02317 686 MobiDBLite consensus disorder prediction 100 114 - -
Pumo11g02317 686 Pfam SAD/SRA domain 267 416 IPR003105 -
Pumo11g02317 686 Pfam RING-type zinc-finger 511 565 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02317 Pumo-Chr11 55863338 55866873 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02317 1 602 C2H2 Transcription Factor Family AT5G39550 57.119 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02317 K10638 - gmx:100801535 1291.95