Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02315 ATGCAACCGACGTCCGGCGGTGGGCTGGCGAGGTTCCACTCAGCTCCGGCGAGCTGGTTAGAATCAGTTCTGTTGAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAAGCCAAGACTCTGACCCCTTAAGCTTCACTCAGCTGCTTTCCACTATCGATGCTCCCTCTCATTCTCAACTCTATGGGATTCCTACTCCCACCGCTATGCCTATGCACATGCCCAATTCCATCACACACAAGGACAAGGAAGTTGAAGTTGAGCGTACTAGTGGTGACATCAAAATGGACAACATGTTAATGTTAGAGGATTCGGTACCTTGCAGGGTGAGGGCAAAGCGTGGCTGTGCTACGCATCCTAGGAGTATTGCTGAAAGGGTTCGCAGGACTCGTATCAGTGACCGCATCAGAAAGCTTCAAGAACTTGTGCCAAACATGGATAAGCAAACAAATACTGCAGATATGTTAGATGAGGCTGTAGCGTATGTCAAGTTTCTACAAAAGCAAATCGAGGATCTGTCAGAGCACCAACGGAGGTGTAAATGCGTGGTTCAAGAGTAA 567 0.478 MQPTSGGGLARFHSAPASWLESVLLKEEEEEEEEEEEEESQDSDPLSFTQLLSTIDAPSHSQLYGIPTPTAMPMHMPNSITHKDKEVEVERTSGDIKMDNMLMLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKFLQKQIEDLSEHQRRCKCVVQE 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02315 188 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 185 IPR036638 GO:0046983
Pumo11g02315 188 Coils Coil 158 178 - -
Pumo11g02315 188 Gene3D - 119 188 IPR036638 GO:0046983
Pumo11g02315 188 MobiDBLite consensus disorder prediction 25 43 - -
Pumo11g02315 188 Coils Coil 20 44 - -
Pumo11g02315 188 FunFam Transcription factor bHLH130 family 119 187 - -
Pumo11g02315 188 Pfam Helix-loop-helix DNA-binding domain 123 169 IPR011598 GO:0046983
Pumo11g02315 188 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 168 IPR011598 GO:0046983
Pumo11g02315 188 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 47 182 - -
Pumo11g02315 188 MobiDBLite consensus disorder prediction 20 46 - -
Pumo11g02315 188 SMART finulus 124 174 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02315 Pumo-Chr11 55804009 55810111 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02315 95 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 76.596 9.94e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo11g02315 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02315 - - gmx:100527723 233.802