Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02305 ATGGGACTTGGAAAGACACTTCAAGCATCAGCAATTGTGGCCTCTGATATTGCTGAGCATCGAACTTCATTTGGGAATGAGGATCTTCTGCCATCTTTAATTATTTGCCCATCAACCCTAGTTGGGCACTGGGCCTTTGAGATAGAGAAGTATATTGATGTTTCTGTTATCTCTAGTCTTCAATATGTTGGTTCTGCTCAGGAGCGAATGCTTCTTCGGGATCATTTTTGCAAGCATAATGTCATCATAACGTCATATGATGTTGTCCGTAAAGATATTGATTTTCTGGGACAGCTGCTGTGGAATCACTGCATCTTAGATGAAGGGCATATAATCAAGAATGCCAAGTCTAAAGTTACACTTGCTGTAAAACAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGGACACCTATACAGAATAACATAATGGACTTGTGGTCCCTTTTTGATTTTCTGATGCCTGGATTTCTTGGAACTGAGAGACAGTTCCAAGCCACATATGGAAAACCACTTTTAGCTGCAAGAGATCCAAAATGCTCTGCTAAGGATGCTGAAGCAGGAGCACTTGCTATGGAGGCATTGCATAAGCAGGTAATGCCTTTCCTCCTTCGTAGGACAAAGGATGAAGTCTTGTCTGATCTGCCAGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCCCTGTACAACTTAAACTTTATGAACAGTTTTCTGGTTCTCGTGCAAAACAAGAAATGTCATCTATTGTAACAACGAACGAGTCCACTGCAGCAGAAGGAAGTAGCAGTTCTACTAAAGCATCTTCACATGTTTTCCAGGCGCTCCAATACTTGCTAAAACTCTGTAGTCATCCATTGCTTGTCATTGGTGAGAAGATTCCAGATTCACTTTCTACTAACCTCTCAGAACTGTTTCCTGCTGGCTCTGATGTTATTTCAGAACTTCACAAACTCTATCACTCCCCAAAATTAGTTGCTCTTCATGAGATTCTTGAAGAGTGTGGGATTGGAGTTGATAATTCAGGTTCTGAGGGTGCGGTTAACGTTGGGCAGCATAGGGTCTTGATATTCGCTCAACATAAGGCTTTCCTGGATATAATTGAAAGAGATTTGTTTCAGACGCACATGAAAAGTGTCACATATTTGCGGTTGGATGGATCAGTTGAGCCAGAAAAGCGTTTTGAAATTGTCAAAGCTTTCAATTCAGACCCTACCATTGATGTCTTACTGCTTACAACACATGTCGGTGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTTTTCGTGGAGCATGACTGGAATCCAATGCGAGACCATCAGGCTATGGATAGAGCACACAGGTTAGGTCAGAAAAAAGTAGTTAATGTCCATCGGCTAATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGTCTACAAAGGTTCAAAGTGTCAGTGGCTAATGCTGTCATTAATGCTGAAAATGCTAGTATGAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCAGCAGAAACCTCCAAGAAGGGCGCATCTGTTGCGAAGAGTTCAGAGAACAACTCTGATGGAGACGCTAAATTAGTAGGCAGTGGGAAGGGATTGAAATCAATACTCGGGGGATTGGAGGAGCTATGGGACCAATCACAATATACAGAGGAGTACAATCTGAGTCAATTTTTAACAAGGCTTAATGGCTAA 1713 0.4151 MGLGKTLQASAIVASDIAEHRTSFGNEDLLPSLIICPSTLVGHWAFEIEKYIDVSVISSLQYVGSAQERMLLRDHFCKHNVIITSYDVVRKDIDFLGQLLWNHCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQATYGKPLLAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSRAKQEMSSIVTTNESTAAEGSSSSTKASSHVFQALQYLLKLCSHPLLVIGEKIPDSLSTNLSELFPAGSDVISELHKLYHSPKLVALHEILEECGIGVDNSGSEGAVNVGQHRVLIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVEPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFASAETSKKGASVAKSSENNSDGDAKLVGSGKGLKSILGGLEELWDQSQYTEEYNLSQFLTRLNG 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02305 570 Gene3D - 216 533 IPR027417 -
Pumo11g02305 570 CDD SF2_C_SNF 321 463 - -
Pumo11g02305 570 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 569 IPR044972 GO:0003677|GO:0016887|GO:0017025
Pumo11g02305 570 Pfam SNF2-related domain 1 288 IPR000330 GO:0005524|GO:0140658
Pumo11g02305 570 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 342 498 IPR001650 -
Pumo11g02305 570 SMART ultradead3 1 167 IPR014001 -
Pumo11g02305 570 SMART helicmild6 366 452 IPR001650 -
Pumo11g02305 570 Pfam Helicase conserved C-terminal domain 350 452 IPR001650 -
Pumo11g02305 570 FunFam TATA-binding protein-associated factor 172 216 533 - -
Pumo11g02305 570 Gene3D - 1 205 IPR038718 -
Pumo11g02305 570 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 156 IPR014001 -
Pumo11g02305 570 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 508 IPR027417 -
Pumo11g02305 570 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 206 IPR027417 -
Pumo11g02305 570 CDD DEXHc_Mot1 1 206 IPR044078 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02305 Pumo-Chr11 55632293 55637076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02305 32 495 RAD5 or RAD16-like Gene Family AT5G22750 26.619 4.39e-47 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo11g02305 SNF2_N 1.5e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02305 K15192 - gmx:100777977 1060.44